Grant: Research Tools and Instruments
Memorial University of Newfoundland
$23,948.00
Dedicated high-powered workstation for machine and deep learning in genomics and industry
FY 2019-20
Summary
***The Department of Mathematics and Statistics at Memorial University of Newfoundland is in the process of significantly strengthening its research endeavours in Data Science. The recent formation of the 12 member Data Science Research Group (https://www.mun.ca/math/dsci), as well as the proposal of a one year MSc in Data Science are just two of our most recent collective efforts to put data science in Atlantic Canada on the map. The present application for infrastructure support is one undertaking in this regard. The requested infrastructure will primarily support the NSERC-funded programs of research of the co-applicants, but will also support the work of the other 10 members of the Data Science Research Group. The infrastructure will enable significant collaboration, co-supervision of HQP, and will allow us to provide state-of-the-art training in highly marketable skills to HQP in this increasingly vital field.*********Our current needs to deploy deep learning or preprocess data to use in machine learning and bioinformatics require a powerful dedicated workstation to allow parallelization, testing, tune-up, and verification. Ordinary machines are simply not capable of tolerating such processing and memory requirements. We have tried to use Compute Canada resources, however due to queuing and wait listing, this resource is not adequate particularly at the prototyping stage where we have to change and tune parameters. We have access to the IBM LSF 10.1.0.6 machine through Memorial University's department of Genetics (www.med.mun.ca/CHIA) and to the cluster Torngat, which is shared among the members of the Centre for Numerical Analysis and Scientific Computing. Unfortunately, both machines are not suitable for the proposed research projects due to RAM constraints and limitations in terms of their GPU capabilities.******The problems we pursue involve enormous, and highly confidential datasets that cannot be efficiently analysed with the infrastructure currently available at MUN. In order to use real datasets to build and test accurate models (for disease detection, weather prediction, and anomaly detection); remain competitive in the data science field; publish in top-tier journals or conferences; attract the best HQP; and to provide HQP with state-of-the-art training, while protecting the integrity of the data, the computational power of the requested equipment is vital.
Program
Research Tools and Instruments
Recipient
Location
Newfoundland and Labrador, Canada
Recipient Type
Academia
Type
Grant
Source
NSERC's Awards Data
As published
Application id
RTI-2020-00719
Name nom
Usefi, Hamid
Department département
Mathematics and Statistics
Organization id
89
Institution établissement
Memorial University of Newfoundland
Province en
Newfoundland and Labrador
Province fr
Terre-Neuve-et-Labrador
Country en
CANADA
Country fr
CANADA
Fiscal year exercice financier
2019
Competition year année de concours
2020
Award amount
23948
Program id
RTI
Program name en
Research Tools and Instruments
Program name fr
Outils et instruments de recherche
Group en
DISCOVERY RESEARCH
Group fr
RECHERCHE AXÉE SUR LA DÉCOUVERTE
Committee code
1608
Committee name en
Mathematics and Statistics RTI Selection Committee
Committee name fr
Comité de sélection OIR - Mathématiques et statistiques
Area of application code
502
Area of application group en
Manufacturing processes and products
Area of application group fr
Procédés et produits industriels
Area of application en
Fibres and textiles
Area of application fr
Fibres et textiles
Research subject code
2804
Research subject group en
Artificial intelligence
Research subject group fr
Intelligence artificielle
Research subject en
Expert systems
Research subject fr
Systèmes experts
Installment
inst:1 - 1
Partie
1
Nb partie
1
Application title
Dedicated high-powered workstation for machine and deep learning in genomics and industry
Keyword
NSERC
Application summary
***The Department of Mathematics and Statistics at Memorial University of Newfoundland is in the process of significantly strengthening its research endeavours in Data Science. The recent formation of the 12 member Data Science Research Group (https://www.mun.ca/math/dsci), as well as the proposal of a one year MSc in Data Science are just two of our most recent collective efforts to put data science in Atlantic Canada on the map. The present application for infrastructure support is one undertaking in this regard. The requested infrastructure will primarily support the NSERC-funded programs of research of the co-applicants, but will also support the work of the other 10 members of the Data Science Research Group. The infrastructure will enable significant collaboration, co-supervision of HQP, and will allow us to provide state-of-the-art training in highly marketable skills to HQP in this increasingly vital field.*********Our current needs to deploy deep learning or preprocess data to use in machine learning and bioinformatics require a powerful dedicated workstation to allow parallelization, testing, tune-up, and verification. Ordinary machines are simply not capable of tolerating such processing and memory requirements. We have tried to use Compute Canada resources, however due to queuing and wait listing, this resource is not adequate particularly at the prototyping stage where we have to change and tune parameters. We have access to the IBM LSF 10.1.0.6 machine through Memorial University's department of Genetics (www.med.mun.ca/CHIA) and to the cluster Torngat, which is shared among the members of the Centre for Numerical Analysis and Scientific Computing. Unfortunately, both machines are not suitable for the proposed research projects due to RAM constraints and limitations in terms of their GPU capabilities.******The problems we pursue involve enormous, and highly confidential datasets that cannot be efficiently analysed with the infrastructure currently available at MUN. In order to use real datasets to build and test accurate models (for disease detection, weather prediction, and anomaly detection); remain competitive in the data science field; publish in top-tier journals or conferences; attract the best HQP; and to provide HQP with state-of-the-art training, while protecting the integrity of the data, the computational power of the requested equipment is vital.