Grant: Project Grant
McMaster University
$956,250.00
A systems biology approach to understanding resistance-associated fitness trade-offs in bacteria
FY 2025-26
Summary
Antibiotic resistance is a growing global health crisis, making infections harder to treat and reducing the effectiveness of life-saving medicines. New antibiotics are difficult to develop, so we are exploring alternative strategies to combat resistant bacteria. One promising approach is collateral sensitivity - a phenomenon where bacteria that become resistant to one antibiotic unexpectedly become more vulnerable to another. If we can systematically uncover these hidden weaknesses, we may be able to design better treatment strategies that slow resistance and restore the effectiveness of existing antibiotics.
Our research has already demonstrated how this approach can work. We discovered that disrupting bacterial fatty acid metabolism can make drug-resistant bacteria susceptible to colistin, an antibiotic of last resort. In another study, we found that bacteria resistant to carbapenems - powerful antibiotics used for severe infections - become more sensitive to inhibitors of cell envelope stress. These findings suggest that when bacteria evolve resistance, they also develop vulnerabilities that can be exploited for treatment.
To expand this research, we have developed a powerful genetic tool based on CRISPR technology that allows us to systematically study resistance mechanisms at a large scale. We propose to use this tool to map genetic and metabolic weak spots in resistant bacteria, identifying new treatment strategies that could extend the lifespan of existing antibiotics.
By uncovering and targeting the hidden costs of resistance, this work has the potential to improve treatment options for drug-resistant infections and slow the spread of resistance, ultimately protecting public health.
Department
Program
Project Grant
Recipient
Location
Ontario, Canada
Recipient Type
Academia
Type
Grant
Source
CIHR Funding Decisions Database
As published
Id
566053
Name
Brown Eric D
Region
Ontario
Country
Canada
Orgtype
Institution Paid; Research Institution
Instname2
Infection and Immunity
Theme2
Biomedical
Prcname2
Genomics: Systems and computational biology
Projecttitle
A systems biology approach to understanding resistance-associated fitness trade-offs in bacteria
Programtype2
Operating Grants
Orgnameinp2
McMaster University
Cihramount2
$956,250
Cihrequipment2
$0
Programname2
Project Grant
Keyworddelim
Antibiotic; Antibiotic Resistance; Chemical Genomics; Collateral Sensitivity; Crispr Interference; Escherichia Coli; Mechanistic Studies; Murine Infection Model; Systems Biology
Abstract
Antibiotic resistance is a growing global health crisis, making infections harder to treat and reducing the effectiveness of life-saving medicines. New antibiotics are difficult to develop, so we are exploring alternative strategies to combat resistant bacteria. One promising approach is collateral sensitivity - a phenomenon where bacteria that become resistant to one antibiotic unexpectedly become more vulnerable to another. If we can systematically uncover these hidden weaknesses, we may be able to design better treatment strategies that slow resistance and restore the effectiveness of existing antibiotics.
Our research has already demonstrated how this approach can work. We discovered that disrupting bacterial fatty acid metabolism can make drug-resistant bacteria susceptible to colistin, an antibiotic of last resort. In another study, we found that bacteria resistant to carbapenems - powerful antibiotics used for severe infections - become more sensitive to inhibitors of cell envelope stress. These findings suggest that when bacteria evolve resistance, they also develop vulnerabilities that can be exploited for treatment.
To expand this research, we have developed a powerful genetic tool based on CRISPR technology that allows us to systematically study resistance mechanisms at a large scale. We propose to use this tool to map genetic and metabolic weak spots in resistant bacteria, identifying new treatment strategies that could extend the lifespan of existing antibiotics.
By uncovering and targeting the hidden costs of resistance, this work has the potential to improve treatment options for drug-resistant infections and slow the spread of resistance, ultimately protecting public health.
Competitiondate
202603
Approvedterm2
5 yrs 0 mth
Pinamesdelim
Brown, Eric D
Approvedterm
5 ans 0 mois
Cihrcontribution2
~ $956,250~ $0~