Grant: Research Tools and Instruments
The University of British Columbia
$144,488.00
Enhanced multicolor STED super-resolution microscopy to study organelle dynamics and interaction
FY 2024-25
Summary
Fluorescence microscopy has made tremendous contributions to the studies of organelles dynamics in living cells but is restricted by the resolution of diffraction-limit light microscopy (~200 nm). Super-resolution microscopy, such as stimulated emission depletion (STED) microscopy, has overcome the diffraction barrier, achieving a lateral resolution of ~50 nm. STED applies a donut-shaped depletion laser to confocal excitation and resolution is determined by the ratio between the maximal intensity in the depletion beam and the intensity at which the probability of fluorescence emission is reduced by half. While high intensity depletion beam enhance resolution, they often result in photobleaching and phototoxicity for live cell imaging.
STED microscopy has contributed enormously to the research programs of the applicants and many other labs at UBC, enabling the novel characterization of endoplasmic reticulum (ER) nanodomains (Nabi), ER-mitochondria contact sites (Nabi, Hamarneh) and ER reorganization upon Zika virus infection (Nabi, Jean, Hamarneh). Vogl used STED to study disruption of cortactin or oxysterol binding protein-related protein 9 at membrane contact sites at tubulobulbar complex (TBC) in testes. Craig used expansion microscopy (ExM) and STED super-resolution microscopy to study synaptic connections in neuropsychiatric disorders.
NSERC RTI funding has allowed us to upgrade our Leica TCS SP8 STED 3X microscope with a 775 nm STED laser, an 86X/1.2 water STED white objective, and fluorescence lifetime analysis with tauSTED, reducing depletion laser intensity required, enhancing resolution, and enabling gentler live-cell STED imaging. However, the detector configuration and setup of our tauSTED system limits multichannel imaging. tauSTED time-gating STED (gSTED) applications only work with HyD detectors and with only two HyD detectors, our STED system can only acquire simultaneous imaging for up to two channels based on between-line acquisition, in which one line of the first channel is followed by the acquisition of one line of the second channel, thus enabling quasi-simultaneous two-colour imaging.
We request funding for new HyD-SMD (single molecule detection) detectors to enable:
1) simultaneous 4-color live cell imaging;
2) stable 3-4 channel 3D tauSTED or gSTED imaging (between line or between-frame to replace current between-stack imaging);
3) Enhanced tauSTED imaging with the new HyD-SMD detectors that acquire 1 photon per pulse.
We also request software upgrades and a workstation to make the STED system and off-line data analysis more accessible to multiple users and acquire tauXtend, an improved Leica deconvolution software module that uses lifetime data.
A new tauSTED super-resolution microscope cost ~$2 million. In contrast, tauSTED upgrade of our Leica TCS SP8 STED 3X microscope for <$150,000 represents a highly cost- effective approach to enhance our super--resolution capabilities to best--of--class.
Program
Research Tools and Instruments
Recipient
Location
British Columbia, Canada
Recipient Type
Academia
Type
Grant
Source
NSERC's Awards Data
As published
Application id
RTI-2025-00569
Name nom
Nabi, Ivan
Department département
Cellular and Physiological Sciences
Organization id
2
Institution établissement
The University of British Columbia
Province en
British Columbia
Province fr
Colombie-Britannique
Country en
CANADA
Country fr
CANADA
Fiscal year exercice financier
2024
Competition year année de concours
2025
Award amount
144488
Program id
RTI
Program name en
Research Tools and Instruments
Program name fr
Outils et instruments de recherche
Group en
DISCOVERY RESEARCH
Group fr
RECHERCHE AXÉE SUR LA DÉCOUVERTE
Committee code
1601
Committee name en
Genes, Cells and Molecules (RTI)
Committee name fr
Gènes, cellules et molécules (OIR)
Area of application code
1201
Area of application group en
Advancement of knowledge
Area of application group fr
Avancement des connaissances
Area of application en
Life sciences (including biotechnology)
Area of application fr
Sciences de la vie (y compris biotechnologie)
Research subject code
5103
Research subject group en
Cell biology
Research subject group fr
Biologie cellulaire
Research subject en
Cell membranes
Research subject fr
Membranes cellulaires
Field of research list names en
Not available
Field of research list names fr
Non disponible
Socioeconomic objective list names en
Not available
Socioeconomic objective list names fr
Non disponible
Application title
Enhanced multicolor STED super-resolution microscopy to study organelle dynamics and interaction
Keywords
super resolution microscopy; fluorescent lifetime; endoplasmic reticulum; organelle; mitochondria; membrane contact sites; cytoskeleton
Application summary
Fluorescence microscopy has made tremendous contributions to the studies of organelles dynamics in living cells but is restricted by the resolution of diffraction-limit light microscopy (~200 nm). Super-resolution microscopy, such as stimulated emission depletion (STED) microscopy, has overcome the diffraction barrier, achieving a lateral resolution of ~50 nm. STED applies a donut-shaped depletion laser to confocal excitation and resolution is determined by the ratio between the maximal intensity in the depletion beam and the intensity at which the probability of fluorescence emission is reduced by half. While high intensity depletion beam enhance resolution, they often result in photobleaching and phototoxicity for live cell imaging.
STED microscopy has contributed enormously to the research programs of the applicants and many other labs at UBC, enabling the novel characterization of endoplasmic reticulum (ER) nanodomains (Nabi), ER-mitochondria contact sites (Nabi, Hamarneh) and ER reorganization upon Zika virus infection (Nabi, Jean, Hamarneh). Vogl used STED to study disruption of cortactin or oxysterol binding protein-related protein 9 at membrane contact sites at tubulobulbar complex (TBC) in testes. Craig used expansion microscopy (ExM) and STED super-resolution microscopy to study synaptic connections in neuropsychiatric disorders.
NSERC RTI funding has allowed us to upgrade our Leica TCS SP8 STED 3X microscope with a 775 nm STED laser, an 86X/1.2 water STED white objective, and fluorescence lifetime analysis with tauSTED, reducing depletion laser intensity required, enhancing resolution, and enabling gentler live-cell STED imaging. However, the detector configuration and setup of our tauSTED system limits multichannel imaging. tauSTED time-gating STED (gSTED) applications only work with HyD detectors and with only two HyD detectors, our STED system can only acquire simultaneous imaging for up to two channels based on between-line acquisition, in which one line of the first channel is followed by the acquisition of one line of the second channel, thus enabling quasi-simultaneous two-colour imaging.
We request funding for new HyD-SMD (single molecule detection) detectors to enable:
1) simultaneous 4-color live cell imaging;
2) stable 3-4 channel 3D tauSTED or gSTED imaging (between line or between-frame to replace current between-stack imaging);
3) Enhanced tauSTED imaging with the new HyD-SMD detectors that acquire 1 photon per pulse.
We also request software upgrades and a workstation to make the STED system and off-line data analysis more accessible to multiple users and acquire tauXtend, an improved Leica deconvolution software module that uses lifetime data.
A new tauSTED super-resolution microscope cost ~$2 million. In contrast, tauSTED upgrade of our Leica TCS SP8 STED 3X microscope for <$150,000 represents a highly cost- effective approach to enhance our super--resolution capabilities to best--of--class.