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Grant: Strategic Projects - Group

University of Alberta

$134,600.00

Integrating functional genomics and genetic mapping to clone genes responsible for low grain cadmium concentration in durum wheat

FY 2008-09

Summary
The dominant source of human exposure to environmental cadmium (Cd) in Canada is through Cd-contaminated food. Accumulation of Cd in Canadian durum wheat, which is worth in excess of $1 billion a year, may pose an unacceptable risk in terms of Cd exposure and may threaten exports of durum wheat. Several pairs of durum wheat lines have been established that differ in grain Cd concentration (high vs. low), but that are otherwise genetically similar. We have previously shown that differences in Cd translocation from the roots to the shoot may explain the differing grain-Cd levels for one of these pairs. The mechanism that limits Cd translocation to the shoot has yet to be identified. We propose to combine the power of transcriptome profiling (to identify genes of interest by comparing gene expression levels) with genetic mapping (to determine which genes of interest are genetically linked to this trait) to identify candidate genes that are potentially involved in regulating Cd accumulation in grain. We will use yeast-based assays as well as a plant-based system (virus-induced gene silencing) to complete a functional analysis of the candidate genes in an attempt to identify the mechanism(s) underlying low grain-Cd. We believe that this approach will expedite the identification of a zero-distance marker for low grain-Cd, thus providing a rapid and accurate method to identify low Cd breeding lines. This will enable continued development of durum wheat varieties with Cd concentrations that meet international regulatory standards. Additionally, such a marker could be used to authenticate and trace Canada's durum wheat exports. Identification of the mechanism underlying low grain-Cd in durum wheat could accelerate similar discoveries in other crops. The techniques and expertise developed in this project could also be extended to other important agronomic traits.
Program
Strategic Projects - Group
Location
Alberta, Canada
Recipient Type
Academia
Type
Grant
Source
NSERC's Awards Data

As published

Application id
336119-2006
Name nom
Taylor, Gregory
Department département
Science, Faculty of
Organization id
9
Institution établissement
University of Alberta
Province en
Alberta
Province fr
Alberta
Country en
CANADA
Country fr
CANADA
Fiscal year exercice financier
2008
Competition year année de concours
2006
Award amount
134600
Program id
STPGP
Program nane en
Strategic Projects - Group
Program name fr
Projets stratégiques - De groupe
Group en
Research partnerships programs
Group fr
Programmes de partenariat
Committee code
1044
Committee name en
Strategic Projects Selection Panel - Food and Bioproducts
Committee name fr
Comité de sélection des projets stratégiques - Aliments et bioproduits
Area of application code
1209
Area of application group en
Advancement of knowledge
Area of application group fr
Avancement des connaissances
Area of application en
Agriculture
Area of application fr
Agriculture
Research subject code
4907
Research subject group en
Plant and treebiology
Research subject group fr
Biologie végétale et des arbres
Research subject en
Water and minerals in plants
Research subject fr
Eau et minéraux dans les végétaux
Partie
3
Nb partie
3
Application title
Integrating functional genomics and genetic mapping to clone genes responsible for low grain cadmium concentration in durum wheat
Keyword
NA
Application summary
The dominant source of human exposure to environmental cadmium (Cd) in Canada is through Cd-contaminated food. Accumulation of Cd in Canadian durum wheat, which is worth in excess of $1 billion a year, may pose an unacceptable risk in terms of Cd exposure and may threaten exports of durum wheat. Several pairs of durum wheat lines have been established that differ in grain Cd concentration (high vs. low), but that are otherwise genetically similar. We have previously shown that differences in Cd translocation from the roots to the shoot may explain the differing grain-Cd levels for one of these pairs. The mechanism that limits Cd translocation to the shoot has yet to be identified. We propose to combine the power of transcriptome profiling (to identify genes of interest by comparing gene expression levels) with genetic mapping (to determine which genes of interest are genetically linked to this trait) to identify candidate genes that are potentially involved in regulating Cd accumulation in grain. We will use yeast-based assays as well as a plant-based system (virus-induced gene silencing) to complete a functional analysis of the candidate genes in an attempt to identify the mechanism(s) underlying low grain-Cd. We believe that this approach will expedite the identification of a zero-distance marker for low grain-Cd, thus providing a rapid and accurate method to identify low Cd breeding lines. This will enable continued development of durum wheat varieties with Cd concentrations that meet international regulatory standards. Additionally, such a marker could be used to authenticate and trace Canada's durum wheat exports. Identification of the mechanism underlying low grain-Cd in durum wheat could accelerate similar discoveries in other crops. The techniques and expertise developed in this project could also be extended to other important agronomic traits.