Grant: Doctoral Award - Frederick Banting and Charles Best Canada Graduate Scholarships
University of British Columbia
$105,000.00
Elucidating the Mechanisms by which Mutations in Histone Modifying Genes Contribute to Lymphomagenesis
FY 2011-12
Summary
Lymphomas are aggressive cancers of the immune system. Non-Hodgkin Lymphomas (NHL), specifically Diffuse Large B-Cell Lymphoma (DLBCL), have a post-treatment survival rate of <50%.
Histones are the proteins that provide DNA with structure and allow it to be tightly packaged. Histone modifiers control the accessibility of transcriptional machinery to the DNA. As such, they play a crucial role in the regulation of transcription of their target genes. Recent studies have reported a large number of mutations in genes encoding for histone modifiers in NHL. However, how they contribute to the development of cancer is unclear.
The goal of my project is to understand how each of these mutations contributes to the development of NHL. I hypothesize that mutant histone modifiers target genes that control cell growth and proliferation. Alternatively, the mutations could foster self-renewal and prevent differentiation. My objectives are to 1) identify and characterize targets of mutant histone modifiers; 2) determine patterns of histone marks that are associated with the mutations; 3) examine if multiple mutations work together to promote cancer development. I will be developing and applying computational techniques to analyze high-throughput sequencing data from clinical DLBCL samples, and a range of mouse models and cell lines with a knock-in of the mutation of interest.
Elucidating the mechanisms by which mutant histone modifiers contribute to cancer initiation and progression will help us better understand and predict how normal and diseased cells regulate their epigenomes. Our findings may uncover other druggable epigenetic factors that may lead to the development of novel therapies to impede their tumorigenic activities. Ultimately, we expect that our findings will result in more specific epigenetic therapeutic strategies for NHL patients, and offer the possibility of a better survival rate for this disease.
Department
Program
Doctoral Award - Frederick Banting and Charles Best Canada Graduate Scholarships
Recipient
Location
British Columbia, Canada
Recipient Type
Academia
Type
Grant
Source
CIHR Funding Decisions Database
As published
Id
257487
Name
Lim Emilia L
Region
British Columbia
Country
Canada
Orgtype
Research Institution; Institution Paid
Instname2
Cancer Research
Theme2
Biomedical
Prcname2
Doctoral Research Awards - A
Projecttitle
Elucidating the Mechanisms by which Mutations in Histone Modifying Genes Contribute to Lymphomagenesis
Programtype2
Studentship Programs
Orgnameinp2
University of British Columbia
Cihramount2
$105,000
Cihrequipment2
$0
Programname2
Doctoral Award - Frederick Banting and Charles Best Canada Graduate Scholarships
Keyworddelim
Bioinformatics; Cancer; Chip-Seq; Differential Expression; Epigenomics; Genomics; Histone Marks; Rna-Seq; Statistics; Therapeutic Targets
Abstract
Lymphomas are aggressive cancers of the immune system. Non-Hodgkin Lymphomas (NHL), specifically Diffuse Large B-Cell Lymphoma (DLBCL), have a post-treatment survival rate of <50%.
Histones are the proteins that provide DNA with structure and allow it to be tightly packaged. Histone modifiers control the accessibility of transcriptional machinery to the DNA. As such, they play a crucial role in the regulation of transcription of their target genes. Recent studies have reported a large number of mutations in genes encoding for histone modifiers in NHL. However, how they contribute to the development of cancer is unclear.
The goal of my project is to understand how each of these mutations contributes to the development of NHL. I hypothesize that mutant histone modifiers target genes that control cell growth and proliferation. Alternatively, the mutations could foster self-renewal and prevent differentiation. My objectives are to 1) identify and characterize targets of mutant histone modifiers; 2) determine patterns of histone marks that are associated with the mutations; 3) examine if multiple mutations work together to promote cancer development. I will be developing and applying computational techniques to analyze high-throughput sequencing data from clinical DLBCL samples, and a range of mouse models and cell lines with a knock-in of the mutation of interest.
Elucidating the mechanisms by which mutant histone modifiers contribute to cancer initiation and progression will help us better understand and predict how normal and diseased cells regulate their epigenomes. Our findings may uncover other druggable epigenetic factors that may lead to the development of novel therapies to impede their tumorigenic activities. Ultimately, we expect that our findings will result in more specific epigenetic therapeutic strategies for NHL patients, and offer the possibility of a better survival rate for this disease.
Competitiondate
201110
Approvedterm2
3 yrs 0 mth
Pinamesdelim
Lim, Emilia L
Approvedterm
3 ans 0 mois
Cihrcontribution2
~ $105,000~ $0~