Grant: Project Grant
University of Toronto
$1,288,184.00
Identifying Vulnerabilities in Fungal Pathogens Through Functional Genomic and Chemical Genomic Analysis of Essential Genes
FY 2015-16
Summary
The impact of fungal pathogens on human health is devastating. They infect billions of people around the globe, and kill more than 1.5 million each year. The most vulnerable are people with reduced immune function, such as those with HIV or those undergoing immune suppressing treatments for cancer or organ transplants. One of the leading fungal pathogens of humans is Candida albicans. It kills ~40% of people suffering from bloodstream infections. Treating these infections is extremely difficult, as fungi are closely related to humans and there are very few drugs that kill the fungus but not the host. With the emergence of drug resistance, it is now critical to develop new therapeutic strategies. To address this important clinical need, it is critical to uncover the genes and genetic networks that are required for the pathogen to survive and cause disease.
We are one of the first academic labs to obtain a powerful resource that will allow us to test the function of almost every gene in the C. albicans genome. Through collaboration with a pharmaceutical company, we now have access to the largest library of C. albicans mutants, which enables genetic depletion of ~40% of genes in the genome. We will use sophisticated computational approaches to predict essential genes, and will expand this resource to cover them all. This resource provides an unprecedented opportunity to identify which genes are essential to the pathogen, and to determine their molecular function. We will use this platform to characterize the impact of reducing the dosage of each gene on growth, cellular physiology, and traits associated with the capacity to cause disease. We will perform state-of-the-art screens to identify new molecules that target essential genes, and will evaluate their therapeutic potential. This research will reveal new approaches to cripple the pathogen, and enable development of novel therapeutic strategies to improve clinical outcome for millions of people.
Department
Program
Project Grant
Recipient
Location
Ontario, Canada
Recipient Type
Academia
Type
Grant
Source
CIHR Funding Decisions Database
As published
Id
343452
Name
Cowen Leah E
Region
Ontario
Country
Canada
Orgtype
Institution Paid; Research Institution
Instname2
Genetics
Theme2
Biomedical
Prcname2
Project Grant Competition
Projecttitle
Identifying Vulnerabilities in Fungal Pathogens Through Functional Genomic and Chemical Genomic Analysis of Essential Genes
Programtype2
Operating Grants
Orgnameinp2
University of Toronto
Cihramount2
$1,288,184
Cihrequipment2
$0
Programname2
Project Grant
Keyworddelim
Antifungal Drug Target Identification; Candida Albicans; Chemical Genomics; Essential Gene Function; Functional Genomics; Fungal Morphogenesis; Fungal Pathogenesis; Haploinsufficiency Profiling; Microbial Genomics; Next Generation Sequencing
Abstract
The impact of fungal pathogens on human health is devastating. They infect billions of people around the globe, and kill more than 1.5 million each year. The most vulnerable are people with reduced immune function, such as those with HIV or those undergoing immune suppressing treatments for cancer or organ transplants. One of the leading fungal pathogens of humans is Candida albicans. It kills ~40% of people suffering from bloodstream infections. Treating these infections is extremely difficult, as fungi are closely related to humans and there are very few drugs that kill the fungus but not the host. With the emergence of drug resistance, it is now critical to develop new therapeutic strategies. To address this important clinical need, it is critical to uncover the genes and genetic networks that are required for the pathogen to survive and cause disease.
We are one of the first academic labs to obtain a powerful resource that will allow us to test the function of almost every gene in the C. albicans genome. Through collaboration with a pharmaceutical company, we now have access to the largest library of C. albicans mutants, which enables genetic depletion of ~40% of genes in the genome. We will use sophisticated computational approaches to predict essential genes, and will expand this resource to cover them all. This resource provides an unprecedented opportunity to identify which genes are essential to the pathogen, and to determine their molecular function. We will use this platform to characterize the impact of reducing the dosage of each gene on growth, cellular physiology, and traits associated with the capacity to cause disease. We will perform state-of-the-art screens to identify new molecules that target essential genes, and will evaluate their therapeutic potential. This research will reveal new approaches to cripple the pathogen, and enable development of novel therapeutic strategies to improve clinical outcome for millions of people.
Competitiondate
201603
Approvedterm2
5 yrs 0 mth
Pinamesdelim
Cowen, Leah E
Approvedterm
5 ans 0 mois
Cihrcontribution2
~ $1,288,184~ $0~