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Grant: Discovery Grants Program - Individual

Memorial University of Newfoundland

$8,000.00

Modeling and inference of the genetics of time-to-event traits in common complex diseases

FY 2006-07

Summary
During the last two decades genetics has experienced a revolution that has generated many challenging mathematical and statistical problems. During this time, gene mapping has been one of the most active areas of research in human genetics. The technological advances in molecular biology and genetics have made it possible to gather very large amounts of data about the structure and regulation of genes, which has turned out to be very useful in the understanding of many simple genetic disorders. However, the genetic mapping of complex diseases is still bounded by methodological limitations. Censored phenotypes, such as age-at-onset (specially late-onset), survival, as well as the longitudinal traits  are considered to be complex quantitative traits and, as for most of the statistical modeling of major genes that affect quantitative variation, they can be framed in the context of a statistical analysis of mixtures and hidden models constrained by the Mendelian laws of inheritance. Current methods for age-at-onset traits use variations of the Cox's proportional hazards model with frailties. However, implicit in this approach is the assumption that all individuals are predisposed (in the sense that if they live long enough, they will get the disease) and what is really modeled are modifiers of susceptibility. In many situations this may not be a realistic model since an increased number of long-term survivors (thus an increased number of late-censored observations) could be taken as evidence that those censored individuals are more likely not predisposed. The main objective of the research outlined in the present proposal is to couple mixture modeling with event history data theory to address the inference about the contribution of predisposing genes and modifier genes in time-to-event traits. The statistical methods to be developed during the tenure of this proposal will be of utility for gene mapping as well as helping us to gain a better understanding of the role of population genetic processes in the modeling of complex traits with onset in adult life.
Program
Discovery Grants Program - Individual
Location
Newfoundland and Labrador, Canada
Recipient Type
Academia
Type
Grant
Source
NSERC's Awards Data

As published

Application id
327133-2006
Name nom
LoredoOsti, JC
Department département
Mathematics and Statistics
Organization id
89
Institution établissement
Memorial University of Newfoundland
Province en
Newfoundland and Labrador
Province fr
Terre-Neuve-et-Labrador
Country en
CANADA
Country fr
CANADA
Fiscal year exercice financier
2006
Competition year année de concours
2006
Award amount
8000
Program id
RGPIN
Program name en
Discovery Grants Program - Individual
Program name fr
Programme de subventions à la découverte - individuelles
Group en
Discovery grants programs
Group fr
Programmes de subventions à la découverte
Committee code
14
Committee name en
Statistical Sciences
Committee name fr
Statistique
Area of application code
1211
Area of application group en
Advancement of knowledge
Area of application group fr
Avancement des connaissances
Area of application en
Medical and health sciences
Area of application fr
Sciences médicales et de la santé
Research subject code
3004
Research subject group en
Statistics and probability
Research subject group fr
Statistique et probabilité
Research subject en
Applied statistics
Research subject fr
Statistique appliquée
Partie
1
Nb partie
3
Application title
Modeling and inference of the genetics of time-to-event traits in common complex diseases
Keyword
NA
Application summary
During the last two decades genetics has experienced a revolution that has generated many challenging mathematical and statistical problems. During this time, gene mapping has been one of the most active areas of research in human genetics. The technological advances in molecular biology and genetics have made it possible to gather very large amounts of data about the structure and regulation of genes, which has turned out to be very useful in the understanding of many simple genetic disorders. However, the genetic mapping of complex diseases is still bounded by methodological limitations. Censored phenotypes, such as age-at-onset (specially late-onset), survival, as well as the longitudinal traits  are considered to be complex quantitative traits and, as for most of the statistical modeling of major genes that affect quantitative variation, they can be framed in the context of a statistical analysis of mixtures and hidden models constrained by the Mendelian laws of inheritance. Current methods for age-at-onset traits use variations of the Cox's proportional hazards model with frailties. However, implicit in this approach is the assumption that all individuals are predisposed (in the sense that if they live long enough, they will get the disease) and what is really modeled are modifiers of susceptibility. In many situations this may not be a realistic model since an increased number of long-term survivors (thus an increased number of late-censored observations) could be taken as evidence that those censored individuals are more likely not predisposed. The main objective of the research outlined in the present proposal is to couple mixture modeling with event history data theory to address the inference about the contribution of predisposing genes and modifier genes in time-to-event traits. The statistical methods to be developed during the tenure of this proposal will be of utility for gene mapping as well as helping us to gain a better understanding of the role of population genetic processes in the modeling of complex traits with onset in adult life.