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Grant: Discovery Grants Program - Individual

The University of Winnipeg

$29,000.00

On the Evaluation of Reachability and Sub-pattern Recognition Queries in Very Large Graph Databases

FY 2023-24

Summary
With the advent of web technology, numerous new applications have emerged, such as social networks, semantic web, and web mining, which need to work with graph-like data due to its expressive power to handle complex relationships among objects. In addition, many other research areas need to model their data as graphs. Instances include trace of infectious diseases, computer vision, knowledge discovery, biological networks, cheminformatics, electrical power grids, and network traffic, just to name a few. To query data graphs, two kinds of queries are being widely used: - Reachability queries, asking whether there exists a path from one node to another. - Graph pattern queries, to find all subgraphs that are isomorphic to a pattern graph. The reachability query is deemed to be one of the most basic building blocks for many advanced graph operations. As an example, consider a network that represents locations, or people as nodes and disease transmission, such as COVID-19, SARS as edges. One may want to know whether a certain disease is spread from a city or a person to the others. As another example, in biological networks, nodes are either molecules, or reactions, or physical interaction of living cells, and edges are interactions among them. We may want to find all genes whose expressions are directly or indirectly influenced by a certain molecule. In addition, in the graph theory, the subgraph isomorphism (recognition) is to check sub-structure identity. Two graphs G(V, E) and G'(V', E') are isomorphic if there exists a bijection f, from V to V', such that (u, v) is in E if (f(u), f(v)) is in E'. It is an NP-complete problem. For this reason, different variants of graph matchings have been suggested, which can be evaluated in polynomial time but quite useful in practice. For example, we can allow an edge in a pattern to match a path in a target, or define a pattern as a constraint to find all those subgraphs satisfying the constraint. Further, in some emerging applications, such as social networks, edges in a graph are typically typed, denoting various relationships such as marriage, friendship, co-work, advice, and so on. It is another important difference from the traditional graph theory, posing new challenges in seeking for efficient algorithms to evaluate reachability queries and graph pattern queries. We have worked on the reachability queries and sub-graph recognition on both typed and untyped graphs for a long time, and developed efficient algorithms with better theoretic time complexity than the existing strategies. All our research results have been published in some prestiges venues, such as ACM Transactions on Database Systems, IEEE Transactions on Knowledge and Data Engineering, Journal of Super Computing, and Intl. Conf. Data Enginerring. The goal of this project is to build a software system to evaluate reachability queries and graph pattern queries on both untyped and typed graphs with our algorithms being utilized.
Program
Discovery Grants Program - Individual
Location
Manitoba, Canada
Recipient Type
Academia
Type
Grant
Source
NSERC's Awards Data

As published

Application id
RGPIN-2022-02971
Name nom
Chen, Yangjun
Department département
Applied Computer Science
Organization id
21
Institution établissement
The University of Winnipeg
Province en
Manitoba
Province fr
Manitoba
Country en
CANADA
Country fr
CANADA
Fiscal year exercice financier
2023
Competition year année de concours
2022
Award amount
29000
Program id
RGPIN
Program name en
Discovery Grants Program - Individual
Program name fr
Programme de subventions à la découverte - individuelles
Group en
DISCOVERY RESEARCH
Group fr
RECHERCHE AXÉE SUR LA DÉCOUVERTE
Committee code
1507
Committee name en
Computer Science
Committee name fr
Sciences informatiques
Area of application code
801
Area of application group en
Information and communication services
Area of application group fr
Services d'information et de télécommunications
Area of application en
Computer software
Area of application fr
Logiciel
Research subject code
2706
Research subject group en
Information technology
Research subject group fr
Software engineering
Research subject en
Technologie de l'information
Research subject fr
Génie logiciel
Application title
On the Evaluation of Reachability and Sub-pattern Recognition Queries in Very Large Graph Databases
Keyword
Big data; Graph databases; Graph theory; Label constrained reachability; Labeled directed graphs; Reachability queries; Recursive graph decomposition; Social network; Sub-pattern recognition; Trace of Epidemics transmission
Application summary
With the advent of web technology, numerous new applications have emerged, such as social networks, semantic web, and web mining, which need to work with graph-like data due to its expressive power to handle complex relationships among objects. In addition, many other research areas need to model their data as graphs. Instances include trace of infectious diseases, computer vision, knowledge discovery, biological networks, cheminformatics, electrical power grids, and network traffic, just to name a few. To query data graphs, two kinds of queries are being widely used: - Reachability queries, asking whether there exists a path from one node to another. - Graph pattern queries, to find all subgraphs that are isomorphic to a pattern graph. The reachability query is deemed to be one of the most basic building blocks for many advanced graph operations. As an example, consider a network that represents locations, or people as nodes and disease transmission, such as COVID-19, SARS as edges. One may want to know whether a certain disease is spread from a city or a person to the others. As another example, in biological networks, nodes are either molecules, or reactions, or physical interaction of living cells, and edges are interactions among them. We may want to find all genes whose expressions are directly or indirectly influenced by a certain molecule. In addition, in the graph theory, the subgraph isomorphism (recognition) is to check sub-structure identity. Two graphs G(V, E) and G'(V', E') are isomorphic if there exists a bijection f, from V to V', such that (u, v) is in E if (f(u), f(v)) is in E'. It is an NP-complete problem. For this reason, different variants of graph matchings have been suggested, which can be evaluated in polynomial time but quite useful in practice. For example, we can allow an edge in a pattern to match a path in a target, or define a pattern as a constraint to find all those subgraphs satisfying the constraint. Further, in some emerging applications, such as social networks, edges in a graph are typically typed, denoting various relationships such as marriage, friendship, co-work, advice, and so on. It is another important difference from the traditional graph theory, posing new challenges in seeking for efficient algorithms to evaluate reachability queries and graph pattern queries. We have worked on the reachability queries and sub-graph recognition on both typed and untyped graphs for a long time, and developed efficient algorithms with better theoretic time complexity than the existing strategies. All our research results have been published in some prestiges venues, such as ACM Transactions on Database Systems, IEEE Transactions on Knowledge and Data Engineering, Journal of Super Computing, and Intl. Conf. Data Enginerring. The goal of this project is to build a software system to evaluate reachability queries and graph pattern queries on both untyped and typed graphs with our algorithms being utilized.
The University of Winnipeg - $29,000 Grant (2023-24) | Canada Spends