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Grant: Doctoral Research Award: Canada Graduate Scholarships

University of Alberta

$105,000.00

Population genomic, bioinformatic, and molecular parasitological assessment of diversity and function of the membrane-trafficking machinery in Giardia intestinalis, a common Canadian enteric pathogen.

FY 2020-21

Summary
Infectious organisms such as bacteria, viruses, fungi, and parasites are an immense burden on the healthcare system in Canada. One such parasite is the diarrhea-causing Giardia intestinalis that is transmitted through contaminated food and water and is prevalent in young children. Previous studies have shown that this parasite is missing many important features in its cargo transport system that is necessary for uptake of nutrients, disposing waste, and protecting itself from the host's immune system. Instead, it has modified its existing compartments and protein machinery and uses it to establish infection in human and animal hosts. Unfortunately, the specific process and the protein parts involved are still not entirely known. Using a combination of cutting-edge computational methods, we will first aim to identify molecular switches in Giardia that normally turn on and off cargo movement processes in our cells. We will then follow it up with molecular testing to determine exactly where and how they are functioning in Giardia's existing transport system. We will also assemble DNA from strains of Giardia from patients, beavers, and water samples collected during outbreaks in British Columbia and examine whether there are differences between them. We have previously used this combinatorial approach to study other proteins in the system which allowed us to uncover new functions that have never been described before. Therefore, we can expect similar findings that will ultimately help us piece together the puzzle of what parts are present and exactly how are they functioning together for this parasite to be causing disease in us.
Program
Doctoral Research Award: Canada Graduate Scholarships
Location
Alberta, Canada
Recipient Type
Academia
Type
Grant
Source
CIHR Funding Decisions Database

As published

Id
439735
Name
Pipaliya Shweta
Region
Alberta
Country
Canada
Orgtype
Institution Paid; Research Institution
Instname2
Infection and Immunity
Theme2
Biomedical
Prcname2
Doctoral Research Awards - A
Projecttitle
Population genomic, bioinformatic, and molecular parasitological assessment of diversity and function of the membrane-trafficking machinery in Giardia intestinalis, a common Canadian enteric pathogen.
Programtype2
Studentship Programs
Orgnameinp2
University of Alberta
Cihramount2
$105,000
Cihrequipment2
$0
Programname2
Doctoral Research Award: Canada Graduate Scholarships
Keyworddelim
Bioinformatics; Evolution; Gastrointestinal Infection; Genome Assembly; Infectious Diseases; Membrane Trafficking; Microbial Parasites; Molecular Biology; Parasitology; Population Genomics
Abstract
Infectious organisms such as bacteria, viruses, fungi, and parasites are an immense burden on the healthcare system in Canada. One such parasite is the diarrhea-causing Giardia intestinalis that is transmitted through contaminated food and water and is prevalent in young children. Previous studies have shown that this parasite is missing many important features in its cargo transport system that is necessary for uptake of nutrients, disposing waste, and protecting itself from the host's immune system. Instead, it has modified its existing compartments and protein machinery and uses it to establish infection in human and animal hosts. Unfortunately, the specific process and the protein parts involved are still not entirely known. Using a combination of cutting-edge computational methods, we will first aim to identify molecular switches in Giardia that normally turn on and off cargo movement processes in our cells. We will then follow it up with molecular testing to determine exactly where and how they are functioning in Giardia's existing transport system. We will also assemble DNA from strains of Giardia from patients, beavers, and water samples collected during outbreaks in British Columbia and examine whether there are differences between them. We have previously used this combinatorial approach to study other proteins in the system which allowed us to uncover new functions that have never been described before. Therefore, we can expect similar findings that will ultimately help us piece together the puzzle of what parts are present and exactly how are they functioning together for this parasite to be causing disease in us.
Competitiondate
202011
Approvedterm2
3 yrs 0 mth
Pinamesdelim
Pipaliya, Shweta
Approvedterm
3 ans 0 mois
Cihrcontribution2
~ $105,000~ $0~
University of Alberta - $105,000 Grant (2020-21) | Canada Spends