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Grant: Alliance Grants

Queen's University

$271,840.00

New genomics and aerial drone tools for monitoring, managing, and mitigating threats in aquatic ecosystems

FY 2024-25

Summary
Aquatic ecosystems house significant biodiversity, provide many ecosystem services, and contribute to human health and economic well-being of many communities, yet are being degraded by multiple environmental stressors including pollution, invasive species, habitat loss and water diversion, and climate change. Our Alliance grant would create and test, a new, cost-effective, integrated toolbox to monitor aquatic ecosystems in Eastern Ontario in near real time. These new tools, tailored for the needs of our partners, will include: i. newly designed unpiloted aerial vehicles (UAV) for sampling remote water bodies up to 10 kms from the operator; ii. new environmental DNA (eDNA) genomics methods for aquatic diversity including Next Generation sequencing metabarcoding quantitative PCR, and digital PCR; iii. a new eDNA laboratory at our partner The River Institute with a cadre of staff trained in molecular methods; and iv. a network comprising The River Institute, Thousand Islands National Park, Mohawk Council of Akwesasne - Environment Program, First Nations Technical Institute, and the Invasive Species Centre together with a platform for community participation. Our system fully implemented and network of organizations and collaborators will: i) Provide early-warning systems for the presence of novel aquatic invasive species at the primary stages of invasion; ii) Allow for detection of harmful algal blooms at their earliest stages to allow for early remediation action; iii) Create a means to detect and monitor cryptic and rare species-at-risk; iv) Allow for monitoring aquatic ecosystems including diversity across trophic levels and the ability to evaluate change against baseline data; and v) leave a legacy of young scientists and community members trained in eDNA and biodiversity assessment. While our focus is regional the tools that we create and the framework that we develop and implement will serve as a model for other regions within Ontario, Canada and globally.
Program
Alliance Grants
Location
Ontario, Canada
Recipient Type
Academia
Type
Grant
Source
NSERC's Awards Data

As published

Application id
580309-2022
Name nom
Lougheed, Stephen SC
Department département
Biology
Organization id
29
Institution établissement
Queen's University
Province en
Ontario
Province fr
Ontario
Country en
CANADA
Country fr
CANADA
Fiscal year exercice financier
2024
Competition year année de concours
2022
Award amount
271840
Program id
ALLRP
Program name en
Alliance Grants
Program name fr
Subventions Alliance
Group en
RESEARCH PARTNERSHIPS
Group fr
PARTENARIATS DE RECHERCHE
Committee code
96
Committee name en
RPP Internal Decision Cttee
Committee name fr
Cté de décision interne - PPR
Area of application code
1002
Area of application group en
Northern development
Area of application group fr
Développement du nord
Area of application en
Environment
Area of application fr
Environnement
Research subject code
4702
Research subject group en
Evolution and ecology
Research subject group fr
Évolution et écologie
Research subject en
Aquatic ecology and limnology
Research subject fr
Écologie aquatique et limnologie
Field of research list names en
Not available
Field of research list names fr
Non disponible
Socioeconomic objective list names en
Not available
Socioeconomic objective list names fr
Non disponible
Application title
New genomics and aerial drone tools for monitoring, managing, and mitigating threats in aquatic ecosystems
Keywords
community science; digital droplet pcr; dna metabarcoding; ecosystem health; environmental dna; environmental stressors; freshwater biodiversity; invasive species; monitoring; species at risk
Application summary
Aquatic ecosystems house significant biodiversity, provide many ecosystem services, and contribute to human health and economic well-being of many communities, yet are being degraded by multiple environmental stressors including pollution, invasive species, habitat loss and water diversion, and climate change. Our Alliance grant would create and test, a new, cost-effective, integrated toolbox to monitor aquatic ecosystems in Eastern Ontario in near real time. These new tools, tailored for the needs of our partners, will include: i. newly designed unpiloted aerial vehicles (UAV) for sampling remote water bodies up to 10 kms from the operator; ii. new environmental DNA (eDNA) genomics methods for aquatic diversity including Next Generation sequencing metabarcoding quantitative PCR, and digital PCR; iii. a new eDNA laboratory at our partner The River Institute with a cadre of staff trained in molecular methods; and iv. a network comprising The River Institute, Thousand Islands National Park, Mohawk Council of Akwesasne - Environment Program, First Nations Technical Institute, and the Invasive Species Centre together with a platform for community participation. Our system fully implemented and network of organizations and collaborators will: i) Provide early-warning systems for the presence of novel aquatic invasive species at the primary stages of invasion; ii) Allow for detection of harmful algal blooms at their earliest stages to allow for early remediation action; iii) Create a means to detect and monitor cryptic and rare species-at-risk; iv) Allow for monitoring aquatic ecosystems including diversity across trophic levels and the ability to evaluate change against baseline data; and v) leave a legacy of young scientists and community members trained in eDNA and biodiversity assessment. While our focus is regional the tools that we create and the framework that we develop and implement will serve as a model for other regions within Ontario, Canada and globally.