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Grant: Alliance Grants

University of Alberta

$90,000.00

Deep learning for digital and virtual histology

FY 2021-22

Summary
The proposed project will leverage the cutting-edge advances in tissue imaging techniques and machine learning to develop next generation virtual and digital pathology toolsets with artificial intelligence-based algorithms: (a) label-free virtual histological imaging and (2) time-efficient cancerous tissue intraoperative diagnosis system on the envisioned virtual images. It includes a partnership between University of Alberta researchers Roger Zemp and Xingyu Li and a Machine Learning company, AltaML. Particularly, it will leverage novel imaging technology pioneered by the Zemp group to form virtual histological images of tissues without cutting, fixing, or staining procedures. The Li group will develop deep-learning based stain-transfer models to render such virtual histological images so that they are virtually indistinguishable from true gold-standard pathology images and investigate deep intraoperative diagnostic models that incorporate explainable artificial intelligence (XAI) to determine the presence and locations of tumor tissues in margins of resected tissues. In the long-term, the goal is to provide a surgeon with a tool to assess whether there may be residual tumor tissues which need removal, using this novel imaging technology along with deep learning toolsets. Along this journey, a secondary goal is to develop deep learning methods that can provide automated histological decision making and generate heatmaps to direct a pathologist's attention for rapid review and accelerated workflow.
Program
Alliance Grants
Location
Alberta, Canada
Recipient Type
Academia
Type
Grant
Source
NSERC's Awards Data

As published

Application id
567581-2021
Name nom
Zemp, Roger
Department département
Engineering, Faculty of
Organization id
9
Institution établissement
University of Alberta
Province en
Alberta
Province fr
Alberta
Country en
CANADA
Country fr
CANADA
Fiscal year exercice financier
2021
Competition year année de concours
2021
Award amount
90000
Program id
ALLRP
Program name en
Alliance Grants
Program name fr
Subventions Alliance
Group en
Research partnerships programs
Group fr
Programmes de partenariat
Committee code
96
Committee name en
RPP Internal Decision Cttee
Committee name fr
Cté de décision interne - PPR
Area of application code
1101
Area of application group en
Health, education and social services
Area of application group fr
Santé publique, éducation et services sociaux
Area of application en
Human health (including medically-related psychological research)
Area of application fr
Santé publique (y compris recherche psychologique liée à la médecine)
Research subject code
1900
Research subject group en
Biomedical engineering
Research subject group fr
Génie biomédical
Research subject en
Biomedical engineering
Research subject fr
Génie biomédical
Installment
inst:1
Partie
1
Nb partie
4
Application title
Deep learning for digital and virtual histology
Keyword
NSERC
Application summary
The proposed project will leverage the cutting-edge advances in tissue imaging techniques and machine learning to develop next generation virtual and digital pathology toolsets with artificial intelligence-based algorithms: (a) label-free virtual histological imaging and (2) time-efficient cancerous tissue intraoperative diagnosis system on the envisioned virtual images. It includes a partnership between University of Alberta researchers Roger Zemp and Xingyu Li and a Machine Learning company, AltaML. Particularly, it will leverage novel imaging technology pioneered by the Zemp group to form virtual histological images of tissues without cutting, fixing, or staining procedures. The Li group will develop deep-learning based stain-transfer models to render such virtual histological images so that they are virtually indistinguishable from true gold-standard pathology images and investigate deep intraoperative diagnostic models that incorporate explainable artificial intelligence (XAI) to determine the presence and locations of tumor tissues in margins of resected tissues. In the long-term, the goal is to provide a surgeon with a tool to assess whether there may be residual tumor tissues which need removal, using this novel imaging technology along with deep learning toolsets. Along this journey, a secondary goal is to develop deep learning methods that can provide automated histological decision making and generate heatmaps to direct a pathologist's attention for rapid review and accelerated workflow.
University of Alberta - $90,000 Grant (2021-22) | Canada Spends