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Grant: Project Grant

University of British Columbia

$822,376.00

Omics, Histopathology and AI: An Integrative Approach for Biomarker Discovery in Ovarian Cancer

FY 2018-19

Summary
Ovarian cancer ranks fifth in cancer deaths among women, accounting for more deaths than any other cancer of the female reproductive system. The revolution in our understanding of genetic and molecular drivers of other cancers has resulted in major improvements in how such cancers are routinely managed. However, standard clinical management of ovarian cancer and patient outcomes have not seen any improvements. Recent findings, including ours, in the classification of ovarian cancer based on genetic markers have important clinical implications, including the potential for identifying new treatments. However, until the discovery of surrogate biomarkers, these sub-classifications are based on labor-intensive assays with long turn around times, limiting their routine use. Visual microscopic study of diseased tissue (referred to as histology) by pathologists has been a cornerstone in cancer diagnosis and prognostication for more than a century. The information present in histology reflects the aggregate effect of genetic alterations on cancer cells and provides a convenient visual readout of disease biology. We will build a platform for characterizing ovarian cancer, based on advanced artificial intelligence (AI) techniques, by combining genetic and histology markers. More specifically, we will build automated differential diagnostic tool for major ovarian cancer subtypes, investigate the relationship between genetic markers, histology and disease outcome, and combine these data for a comprehensive profile of each tumor. New knowledge generated from this project will shed light on the link between histology and genetic markers and identify potential biomarkers that can be rapidly and accurately tested to stratify ovarian cancer for accurate treatment selection.
Program
Project Grant
Location
British Columbia, Canada
Recipient Type
Academia
Type
Grant
Source
CIHR Funding Decisions Database

As published

Id
400727
Name
Gilks Cyril B
Region
British Columbia
Country
Canada
Orgtype
Institution Paid; Research Institution
Instname2
Cancer Research
Theme2
Biomedical
Prcname2
Medical Physics & Imaging
Projecttitle
Omics, Histopathology and AI: An Integrative Approach for Biomarker Discovery in Ovarian Cancer
Programtype2
Operating Grants
Orgnameinp2
University of British Columbia
Cihramount2
$822,376
Cihrequipment2
$0
Programname2
Project Grant
Keyworddelim
Artificial Intelligence; Biomarkers; Computational Biology; Computational Pathology; Genomics; Image Processing; Machine Learning; Ovarian Cancer; Pathology
Abstract
Ovarian cancer ranks fifth in cancer deaths among women, accounting for more deaths than any other cancer of the female reproductive system. The revolution in our understanding of genetic and molecular drivers of other cancers has resulted in major improvements in how such cancers are routinely managed. However, standard clinical management of ovarian cancer and patient outcomes have not seen any improvements. Recent findings, including ours, in the classification of ovarian cancer based on genetic markers have important clinical implications, including the potential for identifying new treatments. However, until the discovery of surrogate biomarkers, these sub-classifications are based on labor-intensive assays with long turn around times, limiting their routine use. Visual microscopic study of diseased tissue (referred to as histology) by pathologists has been a cornerstone in cancer diagnosis and prognostication for more than a century. The information present in histology reflects the aggregate effect of genetic alterations on cancer cells and provides a convenient visual readout of disease biology. We will build a platform for characterizing ovarian cancer, based on advanced artificial intelligence (AI) techniques, by combining genetic and histology markers. More specifically, we will build automated differential diagnostic tool for major ovarian cancer subtypes, investigate the relationship between genetic markers, histology and disease outcome, and combine these data for a comprehensive profile of each tumor. New knowledge generated from this project will shed light on the link between histology and genetic markers and identify potential biomarkers that can be rapidly and accurately tested to stratify ovarian cancer for accurate treatment selection.
Competitiondate
201903
Approvedterm2
3 yrs 0 mth
Pinamesdelim
Gilks, Cyril B; Bashashati, Ali; Salcudean, Septimiu E
Approvedterm
3 ans 0 mois
Cihrcontribution2
~ $822,376~ $0~