Grant: Discovery Grants Program - Individual
Dalhousie University
$60,000.00
Functional characterisation of stress granule composition and morphology
FY 2024-25
Summary
Effective cellular stress response programs minimize damage and allow cells to survive unfavourable conditions. In eukaryotic cells, many stresses (e.g. heat shock, ultraviolet (UV) light damage, oxidative stress) cause transient cessation of protein synthesis to decrease energy consumption and facilitate reprogramming of gene expression. This translation arrest results in formation of stress granules (SGs) - cytoplasmic foci that contain untranslated messenger ribonucleoproteins (mRNPs). These foci form because polysome-free mRNPs recruit proteins with self-aggregating properties, such as the T-cell intracellular antigen 1 (TIA1) and the Ras GTP-ase activating protein binding proteins 1 and 2 (G3BP1/2) that nucleate SG formation. SG formation has been demonstrated for eukaryotes from yeast to humans and thus represents an evolutionarily conserved stress response pathway. However, the functional significance of mRNP aggregation into SGs and its role in responses to different types of stress remain unknown and will represent the long-term objective of my NSERC-funded research program. It is well established that SG formation is not required for stress-induced translation arrest. Thus, other functions have been suggested for SGs, including a) storage and triage of untranslated mRNAs; b) regulation of signaling cascades during stress; c) disruption of nucleocytoplasmic transport through sequestration of specific factors. Even if these and possibly additional functions could be attributed to SGs, their role in response to different types of stress have not been demonstrated to date. Accordingly, elucidating the functions of SGs in various stress response pathways will be one of the major research objectives in my laboratory. In the short term, I will focus on UV light-induced SG formation and the role of SGs in cell survival following UV damage (Aim 1). In parallel, I will characterize stress-dependent differences in SG composition using a proximity proteomics approach (Aim 2).
Proposed studies will answer several important questions relating to SG biology: a) how signaling cascades activated by UV light dictate unique composition and properties of SGs formed following UV exposure; b) how SG formation affects cell survival following UV damage; c) the extent of stress-specific differences in SG composition. The answers to these questions will contribute new knowledge to the field of RNA granule biology that is steadily growing and will inform future studies into functional consequences of SG formation in response to different stress conditions.
Program
Discovery Grants Program - Individual
Recipient
Location
Nova Scotia, Canada
Recipient Type
Academia
Type
Grant
Source
NSERC's Awards Data
As published
Application id
RGPIN-2019-04323
Name nom
Khaperskyy, Denys
Department département
Microbiology & Immunology
Organization id
79
Institution établissement
Dalhousie University
Province en
Nova Scotia
Province fr
Nouvelle-Écosse
Country en
CANADA
Country fr
CANADA
Fiscal year exercice financier
2024
Competition year année de concours
2019
Award amount
60000
Program id
RGPIN
Program name en
Discovery Grants Program - Individual
Program name fr
Programme de subventions à la découverte - individuelles
Group en
DISCOVERY RESEARCH
Group fr
RECHERCHE AXÉE SUR LA DÉCOUVERTE
Committee code
1501
Committee name en
Genes, Cells and Molecules
Committee name fr
Gènes, cellules et molécules
Area of application code
1200
Area of application group en
Advancement of knowledge
Area of application group fr
Avancement des connaissances
Area of application en
Advancement of knowledge
Area of application fr
Avancement des connaissances
Research subject code
5303
Research subject group en
Molecular biology
Research subject group fr
Biologie moléculaire
Research subject en
Gene regulation
Research subject fr
Régulation des gènes
Field of research list names en
Not available
Field of research list names fr
Non disponible
Socioeconomic objective list names en
Not available
Socioeconomic objective list names fr
Non disponible
Application title
Functional characterisation of stress granule composition and morphology
Keywords
stress granules; stress response pathways; proteomics; regulaton of gene expression; transcription; translation; mrna trafficking and turnover
Application summary
Effective cellular stress response programs minimize damage and allow cells to survive unfavourable conditions. In eukaryotic cells, many stresses (e.g. heat shock, ultraviolet (UV) light damage, oxidative stress) cause transient cessation of protein synthesis to decrease energy consumption and facilitate reprogramming of gene expression. This translation arrest results in formation of stress granules (SGs) - cytoplasmic foci that contain untranslated messenger ribonucleoproteins (mRNPs). These foci form because polysome-free mRNPs recruit proteins with self-aggregating properties, such as the T-cell intracellular antigen 1 (TIA1) and the Ras GTP-ase activating protein binding proteins 1 and 2 (G3BP1/2) that nucleate SG formation. SG formation has been demonstrated for eukaryotes from yeast to humans and thus represents an evolutionarily conserved stress response pathway. However, the functional significance of mRNP aggregation into SGs and its role in responses to different types of stress remain unknown and will represent the long-term objective of my NSERC-funded research program. It is well established that SG formation is not required for stress-induced translation arrest. Thus, other functions have been suggested for SGs, including a) storage and triage of untranslated mRNAs; b) regulation of signaling cascades during stress; c) disruption of nucleocytoplasmic transport through sequestration of specific factors. Even if these and possibly additional functions could be attributed to SGs, their role in response to different types of stress have not been demonstrated to date. Accordingly, elucidating the functions of SGs in various stress response pathways will be one of the major research objectives in my laboratory. In the short term, I will focus on UV light-induced SG formation and the role of SGs in cell survival following UV damage (Aim 1). In parallel, I will characterize stress-dependent differences in SG composition using a proximity proteomics approach (Aim 2).
Proposed studies will answer several important questions relating to SG biology: a) how signaling cascades activated by UV light dictate unique composition and properties of SGs formed following UV exposure; b) how SG formation affects cell survival following UV damage; c) the extent of stress-specific differences in SG composition. The answers to these questions will contribute new knowledge to the field of RNA granule biology that is steadily growing and will inform future studies into functional consequences of SG formation in response to different stress conditions.