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Grant: Doctoral Research Award: Canada Graduate Scholarships

University of British Columbia

$105,000.00

Using Natural Language Processing to Generate Text Summaries of Genomic Findings in Precision Oncology

EF 2021-22

Résumé
Tailoring treatment to an individual's genetic profile through precision oncology has played an increasing role in cancer treatment over the last decade. Research has shown that there is value in approaching cancer on a case-by-case basis. However, this approach is labour intensive, requiring the interpretation of genomic results for each patient. Interpretation is currently one of the most significant bottlenecks during analysis due to the volume of data and the expertise needed to extract meaning from the results. Furthermore, results are difficult to translate into something concurrently meaningful for both patients and treating clinicians. Expert analysis and interpretation of a single patient may take several days, hampering the ability to transition precision oncology from research into the clinic and as a standard of care. This proposal aims to use natural language processing to create succinct and informative text summary interpretations for a given patient, which will support expert analysis. Summaries will be tailored to three audience groups: researchers and geneticists, clinicians and clinical nurses, and the general public representing the patients themselves. This will save time in analysis, improve consistency across centres, and provide an accessible format for the comprehension of genomic data.
Programme
Doctoral Research Award: Canada Graduate Scholarships
Emplacement
British Columbia, Canada
Type de bénéficiaire
Academia
Type
Grant
Source
CIHR Funding Decisions Database

Tel que publié

Id
459011
Name
Reisle Caralyn
Region
British Columbia
Country
Canada
Orgtype
Research Institution; Institution Paid
Instname2
Cancer Research
Theme2
Biomedical
Prcname2
Doctoral Research Awards - A
Projecttitle
Using Natural Language Processing to Generate Text Summaries of Genomic Findings in Precision Oncology
Programtype2
Studentship Programs
Orgnameinp2
University of British Columbia
Cihramount2
$105,000
Cihrequipment2
$0
Programname2
Doctoral Research Award: Canada Graduate Scholarships
Keyworddelim
Cancer Genomics; Knowledge Representation; Natural Language Processing; Text Summarization
Abstract
Tailoring treatment to an individual's genetic profile through precision oncology has played an increasing role in cancer treatment over the last decade. Research has shown that there is value in approaching cancer on a case-by-case basis. However, this approach is labour intensive, requiring the interpretation of genomic results for each patient. Interpretation is currently one of the most significant bottlenecks during analysis due to the volume of data and the expertise needed to extract meaning from the results. Furthermore, results are difficult to translate into something concurrently meaningful for both patients and treating clinicians. Expert analysis and interpretation of a single patient may take several days, hampering the ability to transition precision oncology from research into the clinic and as a standard of care. This proposal aims to use natural language processing to create succinct and informative text summary interpretations for a given patient, which will support expert analysis. Summaries will be tailored to three audience groups: researchers and geneticists, clinicians and clinical nurses, and the general public representing the patients themselves. This will save time in analysis, improve consistency across centres, and provide an accessible format for the comprehension of genomic data.
Competitiondate
202111
Approvedterm2
3 yrs 0 mth
Pinamesdelim
Reisle, Caralyn
Approvedterm
3 ans 0 mois
Cihrcontribution2
~ $105,000~ $0~