Grant: Canada Research Chairs
The University of British Columbia
$200,000.00
Theoretical and Computational Biology
EF 2024-25
Résumé
The aim of this CRC application is to formulate, analyse and simulate new mechanobiochemical models describing how single or collective cells migrate through complex non-isotropic two- and three dimensional environments. Understanding the complex mechanisms for cell migration through non-isotropic environments, such as during tissue building and regeneration, immune response, but also cancer, is of fundamental importance to health, experimental, material, and mathematical sciences. However, a framework that could enable theoreticians and experimentalists to capture most of the multiple processes and properties of cell migration does not yet exist. Hence, my research programme seeks to bring to health, experimental and material sciences novel mathematical models with forecasting and prediction capabilities similar to those in weather forecasting.
I will derive new models that couple, in a natural way, biochemical processes and mechanical properties of three intrinsically linked time-evolving domains: the nucleus, cytoplasm and the extracellular matrix (ECM) to understand how living cells navigate through their native environments. I will formulate systems of nonlinear partial differential equations (PDEs), denoted as coupled bulk-surface PDEs, to couple biochemical interactions between molecular species resident on continuously involving domains (bulk represents the cell cytosol and ECM) and manifolds (manifolds represent the nuclear envelope and cell membrane) and the mechanical properties of the nucleus and cytoplasm which are treated as poro and visco-elastic materials, respectively. The energetic nuclear envelope and the plasma membrane, which enclose the nucleus and cytoplasm, respectively, are modelled as hyper and morphoelastic manifolds or surfaces. This ground-breaking theoretical and computational approach allows us to naturally encode the multi-physics and biochemistry of cell motility, morphology and pattern formation to unravel mechanisms for single and collective cell migration.
By advancing knowledge of cutting-edge mathematical concepts, developing new data-driven mathematical formalisms, implementing new numerical and computational methods, designing open-source and commercial software packages, the proposed research and technology development provides numerous opportunities for training and mentoring of a new generation of mathematical and computational biologists (High Qualified Personnel) with theoretical and applied expertise.
Programme
Canada Research Chairs
Bénéficiaire
Emplacement
British Columbia, Canada
Type de bénéficiaire
Academia
Type
Grant
Source
NSERC's Awards Data
Tel que publié
Application id
CRC-2022-00147
Name nom
Madzvamuse, Anotida
Department département
Mathematics - The University of British Columbia
Organization id
2
Institution établissement
The University of British Columbia
Province en
British Columbia
Province fr
Colombie-Britannique
Country en
CANADA
Country fr
CANADA
Fiscal year exercice financier
2024
Competition year année de concours
2022
Award amount
200000
Program id
CRC
Program name en
Canada Research Chairs
Program name fr
Chaires de recherche du Canada
Group en
DISCOVERY RESEARCH
Group fr
RECHERCHE AXÉE SUR LA DÉCOUVERTE
Committee code
9998
Committee name en
Canada Research Chair Selection Committee
Committee name fr
Comité de sélection des Chaires de recherche du Canada
Area of application code
9999
Area of application group en
Not available
Area of application group fr
Non disponible
Area of application en
Not available
Area of application fr
Non disponible
Research subject code
9999
Research subject group en
Not available
Research subject group fr
Non disponible
Research subject en
Not available
Research subject fr
Non disponible
Field of research list codes
RDF1010206; RDF1060114
Field of research list names en
Mathematical biology;Computational biology
Field of research list names fr
Biomathématiques;Biologie numérique
Socioeconomic objective list codes
RDS10701
Socioeconomic objective list names en
Human health procedures and pharmaceutical treatments
Socioeconomic objective list names fr
Interventions et traitements pharmaceutiques ayant trait à la santé humaine
Application title
Theoretical and Computational Biology
Keywords
Mathematical Biology; Computational Biology; Bulk-surface partial differential equations; Bulk-surface finite element methods; Bulk-surface virtual element methods; Bulk-surface reaction-diffusion systems; Numerical analysis; Intracellular transport; Cell migration; Mechanobiochemical modelling
Application summary
The aim of this CRC application is to formulate, analyse and simulate new mechanobiochemical models describing how single or collective cells migrate through complex non-isotropic two- and three dimensional environments. Understanding the complex mechanisms for cell migration through non-isotropic environments, such as during tissue building and regeneration, immune response, but also cancer, is of fundamental importance to health, experimental, material, and mathematical sciences. However, a framework that could enable theoreticians and experimentalists to capture most of the multiple processes and properties of cell migration does not yet exist. Hence, my research programme seeks to bring to health, experimental and material sciences novel mathematical models with forecasting and prediction capabilities similar to those in weather forecasting.
I will derive new models that couple, in a natural way, biochemical processes and mechanical properties of three intrinsically linked time-evolving domains: the nucleus, cytoplasm and the extracellular matrix (ECM) to understand how living cells navigate through their native environments. I will formulate systems of nonlinear partial differential equations (PDEs), denoted as coupled bulk-surface PDEs, to couple biochemical interactions between molecular species resident on continuously involving domains (bulk represents the cell cytosol and ECM) and manifolds (manifolds represent the nuclear envelope and cell membrane) and the mechanical properties of the nucleus and cytoplasm which are treated as poro and visco-elastic materials, respectively. The energetic nuclear envelope and the plasma membrane, which enclose the nucleus and cytoplasm, respectively, are modelled as hyper and morphoelastic manifolds or surfaces. This ground-breaking theoretical and computational approach allows us to naturally encode the multi-physics and biochemistry of cell motility, morphology and pattern formation to unravel mechanisms for single and collective cell migration.
By advancing knowledge of cutting-edge mathematical concepts, developing new data-driven mathematical formalisms, implementing new numerical and computational methods, designing open-source and commercial software packages, the proposed research and technology development provides numerous opportunities for training and mentoring of a new generation of mathematical and computational biologists (High Qualified Personnel) with theoretical and applied expertise.