Grant: Discovery Grants Program - Individual
Brock University
$18,000.00
Parallel computing on interconnection networks and for sequence analysis
EF 2011-12
Résumé
My research is concerned with designing efficient parallel algorithms. Specifically, I will concentrate on (1) parallel algorithms and data structures, and (2) combinatorial/graph theoretical properties of interconnection networks.
Both fundamental and application algorithms will be considered. Fundamental algorithms are algorithms that many applications use frequently. They include routing algorithms, broadcasting (and its variations) and various other data communication algorithms. As for applications, various problems will be considered, e.g., the traditional combinatorial ones such as sorting and searching, graph algorithms and algorithms in computational geometry, as well as algorithms for sequence comparison/analysis in bioinformatics.
The underlining topology for a machine is important to the design of system software such as message passing interface, application algorithms, communication primitives, and thus, the overall performance of the system. We will investigate the topological/combinatorial properties of some of the networks such as Cayley graphs so that we can take advantage of these properties in designing efficient routing/communication algorithms and parallel application algorithms. Another interesting and important aspect of interconnection networks is their combinatorial properties such as the Whitney numbers of the second kind for the poset associated with the graphs (also known as the surface area). These numbers have applications in computing various bounds for data communications, average distances, and transmissions of graphs. In addition, such a study may have applications in genome rearrangement since the vertex set of a Cayley graph is a set of permutations and the vertices may represent genomes and mutations from one genome to another is equivalent to routing on certain Cayley graphs.
Programme
Discovery Grants Program - Individual
Bénéficiaire
Emplacement
Ontario, Canada
Type de bénéficiaire
Academia
Type
Grant
Source
NSERC's Awards Data
Tel que publié
Application id
170168-2011
Name nom
Qiu, Ke
Department département
Computer Science
Organization id
22
Institution établissement
Brock University
Province en
Ontario
Province fr
Ontario
Country en
CANADA
Country fr
CANADA
Fiscal year exercice financier
2011
Competition year année de concours
2011
Award amount
18000
Program id
RGPIN
Program nane en
Discovery Grants Program - Individual
Program name fr
Programme de subventions à la découverte - individuelles
Group en
Discovery grants programs
Group fr
Programmes de subventions à la découverte
Committee code
1507
Committee name en
Computer Science
Committee name fr
Sciences informatiques
Area of application code
1207
Area of application group en
Advancement of knowledge
Area of application group fr
Avancement des connaissances
Area of application en
Information, computer and communication technologies
Area of application fr
Technologie de l'information, des ordinateurs et des réseaux de communications
Research subject code
2704
Research subject group en
Information technology
Research subject group fr
Technologie de l'information
Research subject en
Distributed and parallel processing
Research subject fr
Traitement réparti et simultané
Partie
1
Nb partie
5
Application title
Parallel computing on interconnection networks and for sequence analysis
Keyword
NSERC
Application summary
My research is concerned with designing efficient parallel algorithms. Specifically, I will concentrate on (1) parallel algorithms and data structures, and (2) combinatorial/graph theoretical properties of interconnection networks.
Both fundamental and application algorithms will be considered. Fundamental algorithms are algorithms that many applications use frequently. They include routing algorithms, broadcasting (and its variations) and various other data communication algorithms. As for applications, various problems will be considered, e.g., the traditional combinatorial ones such as sorting and searching, graph algorithms and algorithms in computational geometry, as well as algorithms for sequence comparison/analysis in bioinformatics.
The underlining topology for a machine is important to the design of system software such as message passing interface, application algorithms, communication primitives, and thus, the overall performance of the system. We will investigate the topological/combinatorial properties of some of the networks such as Cayley graphs so that we can take advantage of these properties in designing efficient routing/communication algorithms and parallel application algorithms. Another interesting and important aspect of interconnection networks is their combinatorial properties such as the Whitney numbers of the second kind for the poset associated with the graphs (also known as the surface area). These numbers have applications in computing various bounds for data communications, average distances, and transmissions of graphs. In addition, such a study may have applications in genome rearrangement since the vertex set of a Cayley graph is a set of permutations and the vertices may represent genomes and mutations from one genome to another is equivalent to routing on certain Cayley graphs.