Grant: Research Tools and Instruments
University of Lethbridge
$149,480.00
Replacing a Computer Cluster for Big Biological Data
EF 2015-16
Résumé
Recent advances in experimental technology have driven revolutionary and transformative discoveries in neuroscience. One crucial factor in these new technologies is that they produce a huge amount of data. Analysis of these ‘big data’ requires very powerful computing resources, namely a computer cluster. In 2010, the researchers at the Canadian Centre for Behavioural Neuroscience (CCBN) of the University of Lethbridge (UofL) acquired their first computer cluster. The cluster was utilized extensively and contributed to their research significantly. Now, 5 years after the acquisition of the existing cluster, the processors have become obsolete and the manufacturer’s warranty has expired. It is expected that this kind of high-performance computer is likely to break down any time after 5 years of extensive use. However, the extension of the warranty of the current cluster is not possible because of an unrealistically high renewal cost. If the current cluster stops working, which is expected to happen any time in the near future, it will significantly damage the CCBN productivity. We are therefore requesting a new computer cluster that replaces the existing one. The new computer cluster consists of one head node and eight computing nodes. The head node manages the entire system and distributes the submitted jobs to the computing nodes. The computing nodes are equipped with a total of ~1.3 TB memory for big data analysis and ~20,000 graphics core for highly parallel computation. We also request MATLAB software licenses because MATLAB has become a standard analysis tool for neuroscience and health sciences. The new computer cluster will be used by ~25 professors at the CCBN and the associated departments as well as ~300 trainees. It will support the data analysis of >50 research projects that utilize the cutting-edge electrophysiological, imaging, cellular, molecular and cognitive neuroscientific technologies. In addition, the new cluster will also provide an excellent opportunity for students to gain experience with high-performance computing. All these activities will significantly contribute to translational health researches that are performed at UofL and the associated institutions and hence to the health of people in Canada.
Programme
Research Tools and Instruments
Bénéficiaire
Emplacement
Alberta, Canada
Type de bénéficiaire
Academia
Type
Grant
Source
NSERC's Awards Data
Tel que publié
Application id
RTI-2016-00238
Name nom
Tatsuno, Masami
Department département
Neuroscience - Neuroscience
Organization id
12
Institution établissement
University of Lethbridge
Province en
Alberta
Province fr
Alberta
Country en
CANADA
Country fr
CANADA
Fiscal year exercice financier
2015
Competition year année de concours
2016
Award amount
149480
Program id
RTI
Program name en
Research Tools and Instruments
Program name fr
Outils et instruments de recherche
Group en
Discovery grants programs
Group fr
Programmes de subventions à la découverte
Committee code
1602
Committee name en
Biological Systems and Functions (RTI)
Committee name fr
Systèmes et fonctions biologiques (OIR)
Area of application code
1200
Area of application group en
Advancement of knowledge
Area of application group fr
Avancement des connaissances
Area of application en
Advancement of knowledge
Area of application fr
Avancement des connaissances
Research subject code
6300
Research subject group en
Psychology
Research subject group fr
Psychologie
Research subject en
Psychology
Research subject fr
Psychologie
Partie
1
Nb partie
1
Application title
Replacing a Computer Cluster for Big Biological Data
Keyword
NSERC
Application summary
Recent advances in experimental technology have driven revolutionary and transformative discoveries in neuroscience. One crucial factor in these new technologies is that they produce a huge amount of data. Analysis of these ‘big data’ requires very powerful computing resources, namely a computer cluster. In 2010, the researchers at the Canadian Centre for Behavioural Neuroscience (CCBN) of the University of Lethbridge (UofL) acquired their first computer cluster. The cluster was utilized extensively and contributed to their research significantly. Now, 5 years after the acquisition of the existing cluster, the processors have become obsolete and the manufacturer’s warranty has expired. It is expected that this kind of high-performance computer is likely to break down any time after 5 years of extensive use. However, the extension of the warranty of the current cluster is not possible because of an unrealistically high renewal cost. If the current cluster stops working, which is expected to happen any time in the near future, it will significantly damage the CCBN productivity. We are therefore requesting a new computer cluster that replaces the existing one. The new computer cluster consists of one head node and eight computing nodes. The head node manages the entire system and distributes the submitted jobs to the computing nodes. The computing nodes are equipped with a total of ~1.3 TB memory for big data analysis and ~20,000 graphics core for highly parallel computation. We also request MATLAB software licenses because MATLAB has become a standard analysis tool for neuroscience and health sciences. The new computer cluster will be used by ~25 professors at the CCBN and the associated departments as well as ~300 trainees. It will support the data analysis of >50 research projects that utilize the cutting-edge electrophysiological, imaging, cellular, molecular and cognitive neuroscientific technologies. In addition, the new cluster will also provide an excellent opportunity for students to gain experience with high-performance computing. All these activities will significantly contribute to translational health researches that are performed at UofL and the associated institutions and hence to the health of people in Canada.