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Grant: Project Grant

University of Toronto

$738,225.00

Statistical modeling of spatial omics to optimize discovery and diagnosis of key cancer drivers from patient tissue samples

EF 2025-26

Résumé
Both for scientific studies to understand and find personalized cures for various subtypes of various cancers, and for diagnosis of individual patients with specific cancer markers or subtypes, a critical step is to sample patient tumors via some kind of tissue subsampling procedure (e.g. biopsy), to estimate the properties of the entire tumor. However, tumors are highly heterogeneous and spatially patterned, making it difficult to get accurate estimation of a whole tumor's properties with regional biopsy samples, for the same fundamental statistical reasons as why, e.g. political polling can be inaccurate when polling is concentrated in specific geographic regions. Using a combination of statistical theory, big imaging datasets of human tumors, and practical clinical expertise, we will derive methods to optimally diagnose patients using the least invasive biopsy procedures, and to boost the efficiency at which key drivers of cancer can be newly discovered in studies using patient tissue samples.
Programme
Project Grant
Bénéficiaire
Emplacement
Ontario, Canada
Type de bénéficiaire
Academia
Type
Grant
Source
CIHR Funding Decisions Database

Tel que publié

Id
532816
Name
Wang Shu
Region
Ontario
Country
Canada
Orgtype
Institution Paid; Research Institution
Instname2
Cancer Research
Theme2
Biomedical
Prcname2
Tri-Agency Interdisciplinary - CIHR TIR
Projecttitle
Statistical modeling of spatial omics to optimize discovery and diagnosis of key cancer drivers from patient tissue samples
Programtype2
Operating Grants
Orgnameinp2
University of Toronto
Cihramount2
$738,225
Cihrequipment2
$0
Programname2
Project Grant
Keyworddelim
Cancer; Cell-Cell Interactions; Imaging Mass Cytometry; Patient Diagnosis; Probabilistic Graphical Modeling; Single-Cell Spatial Omics; Spatial Statistics; Statistical Power; Tumor Microenvironment
Abstract
Both for scientific studies to understand and find personalized cures for various subtypes of various cancers, and for diagnosis of individual patients with specific cancer markers or subtypes, a critical step is to sample patient tumors via some kind of tissue subsampling procedure (e.g. biopsy), to estimate the properties of the entire tumor. However, tumors are highly heterogeneous and spatially patterned, making it difficult to get accurate estimation of a whole tumor's properties with regional biopsy samples, for the same fundamental statistical reasons as why, e.g. political polling can be inaccurate when polling is concentrated in specific geographic regions. Using a combination of statistical theory, big imaging datasets of human tumors, and practical clinical expertise, we will derive methods to optimally diagnose patients using the least invasive biopsy procedures, and to boost the efficiency at which key drivers of cancer can be newly discovered in studies using patient tissue samples.
Competitiondate
202509
Approvedterm2
5 yrs 0 mth
Pinamesdelim
Wang, Shu
Approvedterm
5 ans 0 mois
Cihrcontribution2
~ $738,225~ $0~