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Grant: Discovery Grants Program - Individual

University of Victoria

$116,000.00

How are lipid signalling complexes assembled on membranes

EF 2024-25

Résumé
Most cellular responses to signals have a common component of regulation arising from the coordinated recruitment of protein complexes to membranes. The coordination of this process is essential to almost every aspect of a cell's life and death. Studying how proteins interact with lipid membranes is extremely challenging by standard biophysical approaches, and has been a major hurdle in understanding signalling at the molecular level. In the last six years of NSERC support (2014-2019), I have made tremendous progress in defining how lipid signalling systems are regulated. The program I am proposing will continue and expand on this strong track record of success to examine the regulation of lipid signalling proteins. The long-term vision of this research program is to understand the molecular details of how large macromolecular assemblies are recruited, assembled, and regulated on lipid membranes. The specific objectives of the research program are as follows: Objectives  1. Define the molecular mechanism of regulation of guanine nucleotide exchange factors (GEFs) on membranes 2. Define how the Phospholipase C (PLC) family of enzymes is regulated on membranes Approach The biological systems under study in this program will be all be approached using a unique synergy of state of the art structural biology approaches, including HDX-MS, Electron Microscopy (EM), and XRC. This approach is unique within Canada, and provides trainees with an exceptional training opportunity. Many of the complexes under study are extremely large (>500 kDa), and are composed of multiple different proteins. The tandem application of these approaches is essential to the study of these complicated systems, and importantly these tools will be applied in a synergistic way, so that the different approaches can inform novel strategies to optimise the likelihood of success in obtaining high resolution structural information. Specifically, this approach allows for the study of high resolution structural information on how these large protein complexes are assembled, together with dynamic studies using HDX-MS to define conformational changes that occur on membrane surfaces. This approach will allow for critical insight into the molecular mechanisms regulating lipid signalling. Impact and significance This research program describes a long term vision of our goals to understand lipid signalling at the molecular level, as well as a set of clear and achievable medium and short term objectives to study lipid signalling systems of extreme complexity. This research will play a vital role in understanding the mechanisms by which lipid signalling complexes are regulated on membranes, which touches on almost all aspects of cell biology. The immediate impact of this proposal on Canada is the training of highly qualified personnel in advanced techniques including molecular biology, HDX-MS, EM, and XRC, which are all in high demand in the biotechnology sector.
Programme
Discovery Grants Program - Individual
Emplacement
British Columbia, Canada
Type de bénéficiaire
Academia
Type
Grant
Source
NSERC's Awards Data

Tel que publié

Application id
RGPIN-2020-04241
Name nom
Burke, John
Department département
Biochemistry and Microbiology - Biochemistry and Microbiology
Organization id
7
Institution établissement
University of Victoria
Province en
British Columbia
Province fr
Colombie-Britannique
Country en
CANADA
Country fr
CANADA
Fiscal year exercice financier
2024
Competition year année de concours
2020
Award amount
116000
Program id
RGPIN
Program name en
Discovery Grants Program - Individual
Program name fr
Programme de subventions à la découverte - individuelles
Group en
DISCOVERY RESEARCH
Group fr
RECHERCHE AXÉE SUR LA DÉCOUVERTE
Committee code
1501
Committee name en
Genes, Cells and Molecules
Committee name fr
Gènes, cellules et molécules
Area of application code
1201
Area of application group en
Advancement of knowledge
Area of application group fr
Avancement des connaissances
Area of application en
Life sciences (including biotechnology)
Area of application fr
Sciences de la vie (y compris biotechnologie)
Research subject code
5403
Research subject group en
Biochemistry
Research subject group fr
Biochimie
Research subject en
Proteins and peptides, amino acids
Research subject fr
Protéines et peptides, acides aminés
Field of research list names en
Not available
Field of research list names fr
Non disponible
Socioeconomic objective list names en
Not available
Socioeconomic objective list names fr
Non disponible
Application title
How are lipid signalling complexes assembled on membranes
Keywords
molecular structure/function; lipid signalling; ras superfamily gtpases; x-ray crystallography; hydrogen deuterium exchange mass spectrometry; protein-lipid interactions; protein dynamics; electron microscopy; phospholipases; membrane trafficking
Application summary
Most cellular responses to signals have a common component of regulation arising from the coordinated recruitment of protein complexes to membranes. The coordination of this process is essential to almost every aspect of a cell's life and death. Studying how proteins interact with lipid membranes is extremely challenging by standard biophysical approaches, and has been a major hurdle in understanding signalling at the molecular level. In the last six years of NSERC support (2014-2019), I have made tremendous progress in defining how lipid signalling systems are regulated. The program I am proposing will continue and expand on this strong track record of success to examine the regulation of lipid signalling proteins. The long-term vision of this research program is to understand the molecular details of how large macromolecular assemblies are recruited, assembled, and regulated on lipid membranes. The specific objectives of the research program are as follows: Objectives  1. Define the molecular mechanism of regulation of guanine nucleotide exchange factors (GEFs) on membranes 2. Define how the Phospholipase C (PLC) family of enzymes is regulated on membranes Approach The biological systems under study in this program will be all be approached using a unique synergy of state of the art structural biology approaches, including HDX-MS, Electron Microscopy (EM), and XRC. This approach is unique within Canada, and provides trainees with an exceptional training opportunity. Many of the complexes under study are extremely large (>500 kDa), and are composed of multiple different proteins. The tandem application of these approaches is essential to the study of these complicated systems, and importantly these tools will be applied in a synergistic way, so that the different approaches can inform novel strategies to optimise the likelihood of success in obtaining high resolution structural information. Specifically, this approach allows for the study of high resolution structural information on how these large protein complexes are assembled, together with dynamic studies using HDX-MS to define conformational changes that occur on membrane surfaces. This approach will allow for critical insight into the molecular mechanisms regulating lipid signalling. Impact and significance This research program describes a long term vision of our goals to understand lipid signalling at the molecular level, as well as a set of clear and achievable medium and short term objectives to study lipid signalling systems of extreme complexity. This research will play a vital role in understanding the mechanisms by which lipid signalling complexes are regulated on membranes, which touches on almost all aspects of cell biology. The immediate impact of this proposal on Canada is the training of highly qualified personnel in advanced techniques including molecular biology, HDX-MS, EM, and XRC, which are all in high demand in the biotechnology sector.