Grant: Discovery Grants Program - Individual
The University of Western Ontario
$48,000.00
Biological role of the lineage-determining transcription factor Spi-C in B cells
EF 2023-24
Résumé
B lymphocytes are white blood cells in our bodies that make antibodies necessary to fight infection by bacteria and viruses. B lymphocytes develop in the bone marrow through a series of stages that alternate between dividing (proliferating) or resting (quiescent). To make antibodies, B lymphocytes must recombine their immunoglobulin genes using a dangerous enzyme called the recombinase-activating gene (RAG). If recombination occurs during cell division, off-target effects could lead to DNA damage and cell death. Spi-C is a transcription factor, a protein located in the nucleus of cells, that turns other genes on or off. Spi-C is a lineage-determining transcription factor: it can tell cells how to develop by activating or repressing programs of gene expression. Spi-C is known to be expressed in response to RAG-induced DNA damage during B cell development. In preliminary data, we show that Spic is upregulated in response to heme or culture conditions that induce quiescence; whereas Spic is downregulated in response to cytokines that induce cell division. The long-term goal of this research program is to identify the factors that govern cell cycle arrest and cell cycle entry in developing B cells. The short-term goals of our research program are to determine what factors outside the cell activate Spi-C expression, to determine what gene expression programs are regulated by Spi-C, and to determine how Spi-C regulation impacts antibody production. Based on our preliminary data, we hypothesize that Spic is upregulated in response to NF-kappaB-dependent or heme-induced signaling; and downregulated in response to cell cycle progression. To test this hypothesis, we will investigate what regulates Spi-C expression (upstream) and what genes are regulated by Spi-C (downstream). Upstream, we will determine the detailed mechanism by which Spi-C is upregulated in response to heme or NF-kappaB signaling; and the mechanism by which Spi-C is downregulated in response to cell cycle progression. Downstream of Spi-C, we will determine the direct target genes in B cells using a doxycycline-inducible system. Finally, we will determine the in vivo role of Spi-C in the B cell lineage in response to intracellular heme and extracellular heme generated by hemolysis. This work is important because it will provide important insight into the mechanisms underlying B cell differentiation in response to environmental signals. This knowledge can be used to improve antibody responses to bacterial or viral infections. This work will be carried out by HQP primarily at the Masters and undergraduate levels, providing training in research, oral presentation, and writing skills that can be leveraged for future employment and further professional training.
Programme
Discovery Grants Program - Individual
Bénéficiaire
Emplacement
Ontario, Canada
Type de bénéficiaire
Academia
Type
Grant
Source
NSERC's Awards Data
Tel que publié
Application id
RGPIN-2022-03518
Name nom
DeKoter, Rodney
Department département
Microbiology & Immunology
Organization id
36
Institution établissement
The University of Western Ontario
Province en
Ontario
Province fr
Ontario
Country en
CANADA
Country fr
CANADA
Fiscal year exercice financier
2023
Competition year année de concours
2022
Award amount
48000
Program id
RGPIN
Program name en
Discovery Grants Program - Individual
Program name fr
Programme de subventions à la découverte - individuelles
Group en
DISCOVERY RESEARCH
Group fr
RECHERCHE AXÉE SUR LA DÉCOUVERTE
Committee code
1501
Committee name en
Genes, Cells and Molecules
Committee name fr
Gènes, cellules et molécules
Area of application code
1201
Area of application group en
Advancement of knowledge
Area of application group fr
Avancement des connaissances
Area of application en
Life sciences (including biotechnology)
Area of application fr
Sciences de la vie (y compris biotechnologie)
Research subject code
5303
Research subject group en
Molecular biology
Research subject group fr
Gene regulation
Research subject en
Biologie moléculaire
Research subject fr
Régulation des gènes
Application title
Biological role of the lineage-determining transcription factor Spi-C in B cells
Keyword
B cells; Cell Culture; Differentiation; Gene regulation; Transcription factor; Transcriptomics
Application summary
B lymphocytes are white blood cells in our bodies that make antibodies necessary to fight infection by bacteria and viruses. B lymphocytes develop in the bone marrow through a series of stages that alternate between dividing (proliferating) or resting (quiescent). To make antibodies, B lymphocytes must recombine their immunoglobulin genes using a dangerous enzyme called the recombinase-activating gene (RAG). If recombination occurs during cell division, off-target effects could lead to DNA damage and cell death. Spi-C is a transcription factor, a protein located in the nucleus of cells, that turns other genes on or off. Spi-C is a lineage-determining transcription factor: it can tell cells how to develop by activating or repressing programs of gene expression. Spi-C is known to be expressed in response to RAG-induced DNA damage during B cell development. In preliminary data, we show that Spic is upregulated in response to heme or culture conditions that induce quiescence; whereas Spic is downregulated in response to cytokines that induce cell division. The long-term goal of this research program is to identify the factors that govern cell cycle arrest and cell cycle entry in developing B cells. The short-term goals of our research program are to determine what factors outside the cell activate Spi-C expression, to determine what gene expression programs are regulated by Spi-C, and to determine how Spi-C regulation impacts antibody production. Based on our preliminary data, we hypothesize that Spic is upregulated in response to NF-kappaB-dependent or heme-induced signaling; and downregulated in response to cell cycle progression. To test this hypothesis, we will investigate what regulates Spi-C expression (upstream) and what genes are regulated by Spi-C (downstream). Upstream, we will determine the detailed mechanism by which Spi-C is upregulated in response to heme or NF-kappaB signaling; and the mechanism by which Spi-C is downregulated in response to cell cycle progression. Downstream of Spi-C, we will determine the direct target genes in B cells using a doxycycline-inducible system. Finally, we will determine the in vivo role of Spi-C in the B cell lineage in response to intracellular heme and extracellular heme generated by hemolysis. This work is important because it will provide important insight into the mechanisms underlying B cell differentiation in response to environmental signals. This knowledge can be used to improve antibody responses to bacterial or viral infections. This work will be carried out by HQP primarily at the Masters and undergraduate levels, providing training in research, oral presentation, and writing skills that can be leveraged for future employment and further professional training.