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Grant: Doctoral Award - Frederick Banting and Charles Best Canada Graduate Scholarships

Centre for Addiction and Mental Health (Toronto)

$105,000.00

Exploring the shared multi-omic architecture of late-life depression and cognitive decline: Discovering and predicting biologically-defined patient subtypes using machine learning

EF 2017-18

Résumé
Late-life depression (LLD) in adults over the age of 60, is a highly debilitating mental illness affecting up to 16% of older adults in Canada. More than 50% of patients do not achieve remission which is associated with progressive cognitive decline and a 2-3 times increased risk for dementia. In addition, antidepressant treatment is highly variable and might also depend on cognitive functioning in LLD. Given the aging population with 937,000 Canadians expected to develop dementia in the next 15 years, we need to understand the joint biology underlying depression and cognitive decline to inform treatment and reduce the public health burden currently totalling $10.4B dollars/year. The clinical complexity of depression, cognitive decline and dementia requires that advanced statistical methods, such as machine learning, be applied to develop predictive biomarkers based on biologically-informed subgroups of patients. The proposed investigation will have three major aims which will use machine learning models and multiple types of genomic data, including: (1) exploring the existence of cognitively-different subgroups of depressed patients; (2) predicting the discovered subgroups using genomic data; and, (3) understanding whether the cognitive subgroups respond differently to antidepressant treatment. For these aims, I will be using publicly-available data from large studies of older adults including, as well as, well-characterized clinical sample of older adults treated with antidepressants. By leveraging genomic data and large samples, we will be able to discover subgroups of patients which will have different risks for cognitive decline and dementia, which may affect their response to antidepressants. Furthermore, these findings will allow us to develop genetic tests which could be used to personalize and optimize treatment of depression, as well as, to slow the progression of cognitive decline
Programme
Doctoral Award - Frederick Banting and Charles Best Canada Graduate Scholarships
Emplacement
Ontario, Canada
Type
Grant
Source
CIHR Funding Decisions Database

Tel que publié

Id
383366
Name
Marshe Victoria S
Region
Ontario
Country
Canada
Orgtype
Institution Paid; Research Institution
Instname2
Aging
Theme2
Clinical
Prcname2
Doctoral Research Awards - A
Projecttitle
Exploring the shared multi-omic architecture of late-life depression and cognitive decline: Discovering and predicting biologically-defined patient subtypes using machine learning
Programtype2
Studentship Programs
Orgnameinp2
Centre for Addiction and Mental Health (Toronto)
Cihramount2
$105,000
Cihrequipment2
$0
Programname2
Doctoral Award - Frederick Banting and Charles Best Canada Graduate Scholarships
Keyworddelim
Aging; Alzheimer'S Disease; Antidepressant Response; Biomarkers; Cognitive Decline; Dementia; Genomics; Late-Life Depression; Machine Learning; Pharmacogenetics
Abstract
Late-life depression (LLD) in adults over the age of 60, is a highly debilitating mental illness affecting up to 16% of older adults in Canada. More than 50% of patients do not achieve remission which is associated with progressive cognitive decline and a 2-3 times increased risk for dementia. In addition, antidepressant treatment is highly variable and might also depend on cognitive functioning in LLD. Given the aging population with 937,000 Canadians expected to develop dementia in the next 15 years, we need to understand the joint biology underlying depression and cognitive decline to inform treatment and reduce the public health burden currently totalling $10.4B dollars/year. The clinical complexity of depression, cognitive decline and dementia requires that advanced statistical methods, such as machine learning, be applied to develop predictive biomarkers based on biologically-informed subgroups of patients. The proposed investigation will have three major aims which will use machine learning models and multiple types of genomic data, including: (1) exploring the existence of cognitively-different subgroups of depressed patients; (2) predicting the discovered subgroups using genomic data; and, (3) understanding whether the cognitive subgroups respond differently to antidepressant treatment. For these aims, I will be using publicly-available data from large studies of older adults including, as well as, well-characterized clinical sample of older adults treated with antidepressants. By leveraging genomic data and large samples, we will be able to discover subgroups of patients which will have different risks for cognitive decline and dementia, which may affect their response to antidepressants. Furthermore, these findings will allow us to develop genetic tests which could be used to personalize and optimize treatment of depression, as well as, to slow the progression of cognitive decline
Competitiondate
201710
Approvedterm2
3 yrs 0 mth
Pinamesdelim
Marshe, Victoria S
Approvedterm
3 ans 0 mois
Cihrcontribution2
~ $105,000~ $0~