Grant: Discovery Grants Program - Individual
Université d'Ottawa
$56,000.00
Enabling the Design of Advanced Hybrid Bio-Nanonetworks
EF 2023-24
Résumé
Our research in nanotechnology (nanotech) deals with the communication and network formation needs of nanodevices. While new, the technology is critical to the development of intelligent nanotech and will impact several areas, e.g. in-vivo diagnostics, non-invasive nanosurgery, pharmaceutics, treatment of neurodegenerative diseases (e.g. Alzheimer's, Parkinson's) and mental disorders (e.g. Schizophrenia, ASD, ADHD), network-on-chip design and fabrication methods. The technology has evolved along two directions: (i) Dry nanotech: nanodevices are manufactured with inorganic materials, e.g. silicon, graphene. (ii) Wet nanotech: it uses organic materials & nanomachines, e.g. biological cells, proteins, enzymes, bacteria, viruses, DNA and RNA macromolecules, ion particles, etc. Each has its advantages & disadvantages. Several applications would require nanomachines from both categories, e.g. in-vivo monitoring of bio-chemical substances for diagnosis, delivery of smart drugs. There will also be need to manufacture nanomachines consisting of both types; hybrid nanomachines. In case of co-existence, it is important to understand how one type will affect the other. Use of THz Wave (THzW) frequencies (0.1 THz to 10 THz) is considered in intra-body communications. They are non-ionizing, thus should not cause DNA modifications. Also their communication components, e.g. antennas, modulators, can be of nanoscale size. However, there is no thorough study assessing the impact, in-vivo THzW transmissions have, on molecular communications (MC). Diffusion MC (DMC) are sensitive to the entropy level molecules of the medium have. THzW transmissions increase the vibration level of molecules, which, as our initial work confirmed, impacts negatively DMC. In this project, we will establish thorough understanding of this behaviour and develop accurate models of the diffusion channel. Develop design guidelines for hybrid nanomachines, e.g. combined biosensor-THzW transmitter. Develop new MC systems and protocols that perform well in this environment, and propose how we can use the medium's observed behaviour constructively to improve applications (e.g. target drug delivery). The second part of our work deals with Optogenetics (OGN). An emerging fields in neuroscience, OGN modifies otherwise insensitive to light neurons by genetically implanting specialized light-sensitive transmembrane proteins (opsins). There are proposals to use OGN for treatment of brain related disorders. Our OGN related work in this project will develop tools to determine the best way to stimulate an OGN neuron to generate firing sequence as close as possible to a target firing sequence. Develop OGN nanomachines that will enable inter-neural stimulation (replacing neurotransmitter-based stimulation); develop architectures and protocols to effectively move neuronal spike trains through all-OGN nanoneuronal networks.
Programme
Discovery Grants Program - Individual
Bénéficiaire
Emplacement
Ontario, Canada
Type de bénéficiaire
Academia
Type
Grant
Source
NSERC's Awards Data
Tel que publié
Application id
RGPIN-2019-06874
Name nom
MAKRAKIS, DIMITRIOS
Department département
School of Electrical Engineering and Computer Science (EECS)
Organization id
28
Institution établissement
Université d'Ottawa
Province en
Ontario
Province fr
Ontario
Country en
CANADA
Country fr
CANADA
Fiscal year exercice financier
2023
Competition year année de concours
2019
Award amount
56000
Program id
RGPIN
Program name en
Discovery Grants Program - Individual
Program name fr
Programme de subventions à la découverte - individuelles
Group en
DISCOVERY RESEARCH
Group fr
RECHERCHE AXÉE SUR LA DÉCOUVERTE
Committee code
1510
Committee name en
Electrical and Computer Engineering
Committee name fr
Génie électrique et informatique
Area of application code
1207
Area of application group en
Advancement of knowledge
Area of application group fr
Avancement des connaissances
Area of application en
Information, computer and communication technologies
Area of application fr
Technologie de l'information, des ordinateurs et des réseaux de communications
Research subject code
1900
Research subject group en
Biomedical engineering
Research subject group fr
Biomedical engineering
Research subject en
Génie biomédical
Research subject fr
Génie biomédical
Application title
Enabling the Design of Advanced Hybrid Bio-Nanonetworks
Keyword
Bio-communications/Molecular Communications; Bio-Inspired Technology; Bio-nanonetworks; Communication System/Network Modeling; Computer Networks; Hybrid Networks; Modulation, Coding and Detection; Neurons & Neuronal Networks; Wireless Communications; Wireless Networks
Application summary
Our research in nanotechnology (nanotech) deals with the communication and network formation needs of nanodevices. While new, the technology is critical to the development of intelligent nanotech and will impact several areas, e.g. in-vivo diagnostics, non-invasive nanosurgery, pharmaceutics, treatment of neurodegenerative diseases (e.g. Alzheimer's, Parkinson's) and mental disorders (e.g. Schizophrenia, ASD, ADHD), network-on-chip design and fabrication methods. The technology has evolved along two directions: (i) Dry nanotech: nanodevices are manufactured with inorganic materials, e.g. silicon, graphene. (ii) Wet nanotech: it uses organic materials & nanomachines, e.g. biological cells, proteins, enzymes, bacteria, viruses, DNA and RNA macromolecules, ion particles, etc. Each has its advantages & disadvantages. Several applications would require nanomachines from both categories, e.g. in-vivo monitoring of bio-chemical substances for diagnosis, delivery of smart drugs. There will also be need to manufacture nanomachines consisting of both types; hybrid nanomachines. In case of co-existence, it is important to understand how one type will affect the other. Use of THz Wave (THzW) frequencies (0.1 THz to 10 THz) is considered in intra-body communications. They are non-ionizing, thus should not cause DNA modifications. Also their communication components, e.g. antennas, modulators, can be of nanoscale size. However, there is no thorough study assessing the impact, in-vivo THzW transmissions have, on molecular communications (MC). Diffusion MC (DMC) are sensitive to the entropy level molecules of the medium have. THzW transmissions increase the vibration level of molecules, which, as our initial work confirmed, impacts negatively DMC. In this project, we will establish thorough understanding of this behaviour and develop accurate models of the diffusion channel. Develop design guidelines for hybrid nanomachines, e.g. combined biosensor-THzW transmitter. Develop new MC systems and protocols that perform well in this environment, and propose how we can use the medium's observed behaviour constructively to improve applications (e.g. target drug delivery). The second part of our work deals with Optogenetics (OGN). An emerging fields in neuroscience, OGN modifies otherwise insensitive to light neurons by genetically implanting specialized light-sensitive transmembrane proteins (opsins). There are proposals to use OGN for treatment of brain related disorders. Our OGN related work in this project will develop tools to determine the best way to stimulate an OGN neuron to generate firing sequence as close as possible to a target firing sequence. Develop OGN nanomachines that will enable inter-neural stimulation (replacing neurotransmitter-based stimulation); develop architectures and protocols to effectively move neuronal spike trains through all-OGN nanoneuronal networks.