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Grant: CIHR Fellowship

University of British Columbia

$135,000.00

Machine-learning assisted detection for neck lymph node metastasis in early-stage oral cancer

EF 2022-23

Résumé
Mouth cancer (OC) has a worldwide impact with a poor chance of survival. Cancer spreading to the neck (LN+) is a major contributor to poor survival and morbidity, which can be prevented by surgically removing lymph nodes (END) at the earliest stage. However, not all OCs require END as only 25% will develop LN+. Therefore, to avoid over-treating and under-treating the patients, an objective biological marker is needed, yet currently lacking, to accurately identify patients who need END. We have shown that LN+ OC can be detected by characterizing the microscale physical characteristics of cancer cells and abnormality in certain microRNA and inflammatory gene expression. These new biomarkers can detect aggressive early-stage OC with > 90% accuracy compared to currently pathological methods. This project is to build deep learning models for multi-modal data integration to verify and validate the reported signatures case-controlled biopsy and surgical samples. This project's success will help create new risk-assessment methods to improve the decision in END and OC outcomes by avoiding unnecessary health and societal impact caused by unnecessary END or salvage neck treatment.
Programme
CIHR Fellowship
Emplacement
British Columbia, Canada
Type de bénéficiaire
Academia
Type
Grant
Source
CIHR Funding Decisions Database

Tel que publié

Id
473571
Name
Liu Kelly Y
Region
British Columbia
Country
Canada
Orgtype
Research Institution; Institution Paid
Instname2
Cancer Research
Theme2
Biomedical
Prcname2
Fellowships - Post-PhD
Projecttitle
Machine-learning assisted detection for neck lymph node metastasis in early-stage oral cancer
Programtype2
Fellowship Programs
Orgnameinp2
University of British Columbia
Cihramount2
$135,000
Cihrequipment2
$0
Programname2
CIHR Fellowship
Keyworddelim
Case-Controlled; Deep Learning; Formalin-Fixed Paraffin Embedded Tissues; Image Analysis; Microrna; Neck Lymph Node Metastasis; Oral Cancer; Tumour Immune Microenvironment
Abstract
Mouth cancer (OC) has a worldwide impact with a poor chance of survival. Cancer spreading to the neck (LN+) is a major contributor to poor survival and morbidity, which can be prevented by surgically removing lymph nodes (END) at the earliest stage. However, not all OCs require END as only 25% will develop LN+. Therefore, to avoid over-treating and under-treating the patients, an objective biological marker is needed, yet currently lacking, to accurately identify patients who need END. We have shown that LN+ OC can be detected by characterizing the microscale physical characteristics of cancer cells and abnormality in certain microRNA and inflammatory gene expression. These new biomarkers can detect aggressive early-stage OC with > 90% accuracy compared to currently pathological methods. This project is to build deep learning models for multi-modal data integration to verify and validate the reported signatures case-controlled biopsy and surgical samples. This project's success will help create new risk-assessment methods to improve the decision in END and OC outcomes by avoiding unnecessary health and societal impact caused by unnecessary END or salvage neck treatment.
Competitiondate
202210
Approvedterm2
3 yrs 0 mth
Pinamesdelim
Liu, Kelly Y
Approvedterm
3 ans 0 mois
Cihrcontribution2
~ $135,000~ $0~